- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 7 x CA: CALCIUM ION(Non-covalent)
- 14 x PLM: PALMITIC ACID(Non-covalent)(Covalent)
PLM.6: 7 residues within 4Å:- Chain A: M.214, S.240, Y.241, G.242, L.245
- Ligands: PLM.7, PLM.10
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.241, A:L.245
- Hydrogen bonds: A:S.240, A:G.242
PLM.7: 10 residues within 4Å:- Chain A: W.213, M.214, L.217, G.242, L.245, Y.246, W.636, V.643
- Ligands: PLM.6, PLM.12
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:W.213, A:L.217, A:L.245, A:L.245, A:Y.246, A:W.636, A:W.636, A:V.643, A:V.643
PLM.8: 5 residues within 4Å:- Chain A: Y.179, I.183, I.572, V.576
- Ligands: PLM.9
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Y.179, A:I.183, A:V.576
- Salt bridges: A:K.85
PLM.9: 8 residues within 4Å:- Chain A: I.568, Y.569, I.572, V.576, W.637, S.638, Y.641
- Ligands: PLM.8
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:I.568, A:Y.569, A:Y.569, A:I.572, A:I.572, A:V.576, A:V.576, A:W.637, A:Y.641
- Hydrogen bonds: A:S.638
PLM.10: 3 residues within 4Å:- Chain A: F.219, Y.241
- Ligands: PLM.6
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:F.219, A:Y.241
PLM.11: 8 residues within 4Å:- Chain A: R.269, W.270
- Chain B: F.563, L.566, M.610, V.611, F.614, L.617
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:R.269, A:W.270, B:F.563, B:L.566, B:V.611, B:L.617
PLM.12: 5 residues within 4Å:- Chain A: W.636, W.637, T.640, V.643
- Ligands: PLM.7
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:W.636, A:W.637, A:T.640, A:V.643
PLM.16: 7 residues within 4Å:- Chain B: M.214, S.240, Y.241, G.242, L.245
- Ligands: PLM.17, PLM.20
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.241, B:L.245
- Hydrogen bonds: B:S.240, B:G.242
PLM.17: 10 residues within 4Å:- Chain B: W.213, M.214, L.217, G.242, L.245, Y.246, W.636, V.643
- Ligands: PLM.16, PLM.22
8 PLIP interactions:8 interactions with chain B- Hydrophobic interactions: B:W.213, B:L.217, B:L.245, B:L.245, B:Y.246, B:W.636, B:V.643, B:V.643
PLM.18: 5 residues within 4Å:- Chain B: Y.179, I.183, I.572, V.576
- Ligands: PLM.19
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.179, B:I.183, B:V.576
- Salt bridges: B:K.85
PLM.19: 8 residues within 4Å:- Chain B: I.568, Y.569, I.572, V.576, W.637, S.638, Y.641
- Ligands: PLM.18
10 PLIP interactions:10 interactions with chain B- Hydrophobic interactions: B:I.568, B:Y.569, B:Y.569, B:I.572, B:I.572, B:V.576, B:V.576, B:W.637, B:Y.641
- Hydrogen bonds: B:S.638
PLM.20: 4 residues within 4Å:- Chain B: L.215, F.219, Y.241
- Ligands: PLM.16
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:L.215, B:F.219, B:Y.241
PLM.21: 10 residues within 4Å:- Chain A: E.101, L.102, F.563, L.566, M.610, V.611, F.614, L.617
- Chain B: R.269, W.270
10 PLIP interactions:8 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:L.102, A:F.563, A:L.566, A:V.611, A:F.614, A:F.614, A:L.617, B:R.269, B:W.270
- Hydrogen bonds: A:E.101
PLM.22: 7 residues within 4Å:- Chain B: T.635, W.636, W.637, T.640, V.643, S.644
- Ligands: PLM.17
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:W.636, B:W.637, B:T.640, B:V.643
- Hydrogen bonds: B:T.635
- 2 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE(Covalent)
3PH.13: 14 residues within 4Å:- Chain A: F.69, F.73, F.77, F.185, I.189, R.190, E.191, L.192, M.556, P.557, L.559, G.560, F.563
- Chain B: L.280
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:F.69, A:F.69, A:F.69, A:F.73, A:F.77, A:F.185, A:I.189, A:I.189, A:E.191, A:E.191, A:L.192, A:M.556, A:F.563
- Salt bridges: A:R.190
3PH.23: 12 residues within 4Å:- Chain A: L.280
- Chain B: F.69, F.77, I.189, R.190, E.191, L.192, M.556, P.557, L.559, G.560, F.563
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:F.69, B:F.69, B:F.77, B:I.189, B:I.189, B:E.191, B:E.191, B:L.192, B:M.556, B:F.563
- Salt bridges: B:R.190
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kintzer, A.F. et al., Structural basis for activation of voltage sensor domains in an ion channel TPC1. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-09-19
- Peptides
- Two pore calcium channel protein 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-dimer
- Ligands
- 7 x CA: CALCIUM ION(Non-covalent)
- 14 x PLM: PALMITIC ACID(Non-covalent)(Covalent)
- 2 x 3PH: 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE(Covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kintzer, A.F. et al., Structural basis for activation of voltage sensor domains in an ion channel TPC1. Proc. Natl. Acad. Sci. U.S.A. (2018)
- Release Date
- 2018-09-19
- Peptides
- Two pore calcium channel protein 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B - Membrane
-
We predict this structure to be a membrane protein.