- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DP6: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID(Non-covalent)
- 2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
ACP.2: 24 residues within 4Å:- Chain A: T.66, T.68, F.81, L.83, Q.92, T.93, K.94, K.95, V.96, V.115, S.117, N.119, A.128, S.129, S.130, S.132, G.133, L.134, L.137, S.214, S.215, A.307
- Ligands: DP6.1, MG.3
15 PLIP interactions:15 interactions with chain A- Hydrogen bonds: A:T.66, A:T.93, A:K.95, A:V.96, A:N.119, A:S.129, A:S.130, A:S.215, A:S.215, A:S.215, A:S.215
- Water bridges: A:K.95, A:A.131, A:R.216
- Salt bridges: A:K.95
ACP.5: 24 residues within 4Å:- Chain B: T.66, T.68, F.81, L.83, Q.92, T.93, K.94, K.95, V.96, V.115, S.117, N.119, A.128, S.129, S.130, S.132, G.133, L.134, L.137, S.214, S.215, A.307
- Ligands: DP6.4, MG.6
15 PLIP interactions:15 interactions with chain B- Hydrogen bonds: B:T.66, B:T.93, B:K.95, B:V.96, B:N.119, B:S.129, B:S.130, B:S.215, B:S.215, B:S.215, B:S.215
- Water bridges: B:K.95, B:A.131, B:R.216
- Salt bridges: B:K.95
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 7 residues within 4Å:- Chain A: K.95, A.128, S.130, S.164, S.215
- Ligands: DP6.1, ACP.2
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:S.130
MG.6: 7 residues within 4Å:- Chain B: K.95, A.128, S.130, S.164, S.215
- Ligands: DP6.4, ACP.5
1 PLIP interactions:1 interactions with chain B- Metal complexes: B:S.130
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, C.L. et al., Visualizing the enzyme mechanism of mevalonate diphosphate decarboxylase. Nat Commun (2020)
- Release Date
- 2020-01-15
- Peptides
- Mevalonate diphosphate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x DP6: (3R)-3-HYDROXY-5-{[(R)-HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}-3-METHYLPENTANOIC ACID(Non-covalent)
- 2 x ACP: PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chen, C.L. et al., Visualizing the enzyme mechanism of mevalonate diphosphate decarboxylase. Nat Commun (2020)
- Release Date
- 2020-01-15
- Peptides
- Mevalonate diphosphate decarboxylase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A