SMTL ID : 6e3k.1

Interferon gamma signalling complex with IFNGR1 and IFNGR2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.25 Å

Oligo State

hetero-2-2-2-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain B: K.90 Chain E: T.45, N.85, W.106, Q.108, R.111 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN.2: 8 residues within 4Å: Chain A: S.88, K.90, D.94 Chain F: T.45, N.85, W.106, Q.108, R.111 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.94

12 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 4 residues within 4Å: Chain A: D.25, D.28, N.29 Chain B: N.108 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:D.28 NAG.4: 4 residues within 4Å: Chain A: N.108 Chain B: D.25, D.28, N.29 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:D.28 NAG.6: 4 residues within 4Å: Chain C: I.30, N.71, S.73, D.74 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:I.30 Hydrogen bonds: C:N.71, C:S.73, C:D.74 NAG.7: 2 residues within 4Å: Chain C: N.19, E.34 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.19 NAG.10: 2 residues within 4Å: Chain D: N.19, E.34 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:E.34 Hydrogen bonds: D:N.19 NAG.11: 4 residues within 4Å: Chain D: I.30, N.71, S.73, D.74 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:I.30 Hydrogen bonds: D:S.73, D:S.73 NAG.13: 6 residues within 4Å: Chain E: I.54, N.60, T.62, Q.63, I.64, T.65 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:I.54 Hydrogen bonds: E:T.65 NAG.14: 5 residues within 4Å: Chain E: I.13, P.105, W.106, F.107, N.112 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:I.13, E:F.107 Hydrogen bonds: E:W.106, E:W.106, E:N.112 NAG.15: 1 residues within 4Å: Chain E: N.206 No protein-ligand interaction detected (PLIP) NAG.17: 5 residues within 4Å: Chain F: N.60, T.62, Q.63, I.64, T.65 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:T.65 NAG.18: 1 residues within 4Å: Chain F: N.206 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.206 NAG.19: 4 residues within 4Å: Chain F: P.105, W.106, R.111, N.112 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:P.105 Hydrogen bonds: F:W.106, F:R.111, F:N.112

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 5 residues within 4Å: Chain A: T.100, Y.102 Chain B: S.55, F.56, K.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.102 EDO.8: 2 residues within 4Å: Chain C: E.47, D.60 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.60 EDO.9: 4 residues within 4Å: Chain C: D.179, D.181, R.184, Q.186 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.181 EDO.12: 2 residues within 4Å: Chain D: E.47, D.60 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:D.60 EDO.21: 2 residues within 4Å: Chain F: S.30, N.31 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.31 EDO.22: 3 residues within 4Å: Chain F: W.24, E.25, T.67 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:E.25, F:T.67, F:T.67

2 x CYS: CYSTEINE(Non-covalent)

CYS.16: 3 residues within 4Å: Chain E: C.149, P.166, R.168 No protein-ligand interaction detected (PLIP) CYS.20: 3 residues within 4Å: Chain F: C.149, P.166, R.168 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mendoza, J.L. et al., Structure of the IFN gamma receptor complex guides design of biased agonists. Nature (2019)

Release Date

2019-02-27

Peptides

Interferon gamma: AB
Interferon gamma receptor 1: CD
Interferon gamma receptor 2: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
I

Interferon gamma

Interferon gamma receptor 1

Interferon gamma receptor 2

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