SMTL ID : 6e3l.1

Interferon gamma signalling complex with IFNGR1 and IFNGR2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.80 Å

Oligo State

hetero-2-2-2-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain C: N.28, I.30, N.71, S.73, D.74 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 7 residues within 4Å: Chain B: S.88, K.90 Chain E: Y.44, T.45, N.85, T.87, W.106 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 6 residues within 4Å: Chain A: S.88, K.90 Chain F: T.45, N.85, T.87, W.106 No protein-ligand interaction detected (PLIP)

3 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.2: 3 residues within 4Å: Chain D: I.30, N.71, S.73 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 4 residues within 4Å: Chain E: V.37, I.54, N.60, Q.63 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:V.37 NAG-NAG-BMA.5: 3 residues within 4Å: Chain F: V.37, N.60, Q.63 1 PLIP interactions: 1 interactions with chain F Hydrophobic interactions: F:V.37

1 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.6: 5 residues within 4Å: Chain F: P.105, W.106, R.111, N.112, R.200 No protein-ligand interaction detected (PLIP)

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.8: 3 residues within 4Å: Chain A: D.28, N.29 Chain B: N.108 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:N.108 Hydrogen bonds: B:N.108, B:N.108, B:N.108, A:N.29 NAG.9: 4 residues within 4Å: Chain A: N.108, R.111 Chain B: D.25, N.29 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.29 NAG.10: 2 residues within 4Å: Chain D: T.18, N.19 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:T.18 NAG.11: 4 residues within 4Å: Chain E: P.105, W.106, R.111, N.112 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:P.105 Hydrogen bonds: E:W.106, E:N.112 NAG.12: 4 residues within 4Å: Chain E: Q.4, L.5, L.29, N.31 1 PLIP interactions: 1 interactions with chain E Hydrophobic interactions: E:L.29

2 x CYS: CYSTEINE(Non-covalent)

CYS.13: 2 residues within 4Å: Chain E: C.149, P.166 No protein-ligand interaction detected (PLIP) CYS.14: 4 residues within 4Å: Chain F: C.149, P.166, R.168, L.192 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mendoza, J.L. et al., Structure of the IFN gamma receptor complex guides design of biased agonists. Nature (2019)

Release Date

2019-02-27

Peptides

Interferon gamma: AB
Interferon gamma receptor 1: CD
Interferon gamma receptor 2: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
I

Interferon gamma

Interferon gamma receptor 1

Interferon gamma receptor 2

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