SMTL ID : 6e68.1

NAMPT co-crystal with inhibitor compound 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: R.33, R.385, C.390, S.391, K.393, K.408, K.416 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:S.391 Water bridges: A:R.33, A:R.385, A:N.389, A:K.393, A:K.393, A:K.393, A:K.393, A:K.408, A:K.416 Salt bridges: A:R.33, A:R.385, A:K.393, A:K.408 PO4.3: 6 residues within 4Å: Chain B: R.33, R.385, S.391, K.393, K.408, K.416 21 PLIP interactions: 18 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:S.391 Water bridges: B:R.33, B:R.33, B:R.385, B:R.385, B:R.385, B:N.389, B:K.393, B:K.393, B:K.393, B:K.408, B:K.408, B:K.416, A:D.306, A:D.306, A:D.306 Salt bridges: B:R.33, B:R.385, B:K.393, B:K.408, B:K.416

2 x HVM: (2E)-N-{4-[1-(3-aminobenzene-1-carbonyl)piperidin-4-yl]butyl}-3-(pyridin-3-yl)prop-2-enamide(Non-covalent)

HVM.2: 23 residues within 4Å: Chain A: Y.181, K.182, H.184, F.186, R.189, D.212, S.234, V.235, A.237, P.266, S.268, P.300, I.302, R.304, R.342, V.343, I.344, E.369, N.370, I.371, A.372 Chain B: D.9, Y.11 23 PLIP interactions: 20 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:F.186, A:F.186, A:F.186, A:V.235, A:V.235, A:A.237, A:I.302, A:R.342, A:R.342, A:A.372, B:Y.11, B:Y.11 Hydrogen bonds: A:K.182, A:D.212, A:S.268, A:R.342 Water bridges: A:D.212, A:D.212, A:R.304, A:R.342, A:E.369 pi-Stacking: A:F.186, B:Y.11 HVM.4: 24 residues within 4Å: Chain A: D.9, Y.11 Chain B: G.178, Y.181, K.182, H.184, F.186, R.189, D.212, S.234, V.235, A.237, P.266, S.268, P.300, I.302, R.304, R.342, V.343, I.344, E.369, N.370, I.371, A.372 23 PLIP interactions: 19 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:F.186, B:F.186, B:F.186, B:V.235, B:V.235, B:A.237, B:I.302, B:R.342, B:R.342, B:A.372, A:Y.11, A:Y.11 Hydrogen bonds: B:K.182, B:R.189, B:S.268, B:R.342, B:E.369 Water bridges: B:Y.188, B:D.212, B:R.304, A:D.9 pi-Stacking: B:F.186, A:Y.11

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neumann, C.S. et al., NAMPT co-crystal with inhibitor compound 2. to be published

Release Date

2018-08-08

Peptides

Nicotinamide phosphoribosyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nicotinamide phosphoribosyltransferase