SMTL ID : 6e73.1

Structure of Human Transthyretin Val30Met Mutant in Complex with Diflunisal

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-tetramer

Ligands

4 x 1FL: 5-(2,4-DIFLUOROPHENYL)-2-HYDROXY-BENZOIC ACID(Non-covalent)

1FL.1: 13 residues within 4Å: Chain A: K.6, L.8, A.99, L.101 Chain C: K.6, L.8, A.99, A.100, L.101, S.108, T.109, T.110 Ligands: 1FL.4 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:L.8, A:A.99, C:K.6, C:A.99 1FL.3: 14 residues within 4Å: Chain B: K.6, L.8, A.99, L.101, S.108 Chain D: K.6, L.8, A.99, A.100, L.101, S.108, T.109, T.110 Ligands: 1FL.6 11 PLIP interactions: 7 interactions with chain D, 4 interactions with chain B Hydrophobic interactions: D:K.6, D:A.99, D:L.101, B:K.6, B:L.8, B:L.101 Hydrogen bonds: D:A.100, D:L.101, D:T.110 Halogen bonds: D:K.6, B:K.6 1FL.4: 13 residues within 4Å: Chain A: K.6, L.8, A.99, A.100, L.101, S.108, T.109, T.110 Chain C: K.6, L.8, A.99, L.101 Ligands: 1FL.1 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:K.6, A:A.99, C:L.8, C:A.99 1FL.6: 14 residues within 4Å: Chain B: K.6, L.8, A.99, A.100, L.101, S.108, T.109, T.110 Chain D: K.6, L.8, A.99, L.101, S.108 Ligands: 1FL.3 11 PLIP interactions: 7 interactions with chain B, 4 interactions with chain D Hydrophobic interactions: B:K.6, B:A.99, B:L.101, D:K.6, D:L.8, D:L.101 Hydrogen bonds: B:A.100, B:L.101, B:T.110 Halogen bonds: B:K.6, D:K.6

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 9 residues within 4Å: Chain A: L.101, S.103, S.106, S.108 Chain D: L.101, S.103, S.106, Y.107, S.108 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain D Hydrophobic interactions: A:L.101 Hydrogen bonds: A:S.103, A:S.103 Water bridges: D:S.108, D:S.108 ACT.5: 9 residues within 4Å: Chain B: L.101, S.103, S.106, Y.107, S.108 Chain C: L.101, S.103, S.106, S.108 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain C Water bridges: B:S.108, B:S.108 Hydrophobic interactions: C:L.101 Hydrogen bonds: C:S.103, C:S.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saelices, L. et al., Structural Variants of Transthyretin. to be published

Release Date

2019-07-31

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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