SMTL ID : 6e76.1

Structure of Human Transthyretin Asp38Ala/Thr119Met Mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: L.101, S.103, S.106, Y.107, S.108 Chain D: L.101, S.103, S.106, Y.107, S.108 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:S.103, A:Y.107, D:S.103, D:Y.107 GOL.2: 6 residues within 4Å: Chain A: T.97, A.99, V.112 Chain C: K.6, L.8 Ligands: GOL.7 No protein-ligand interaction detected (PLIP) GOL.6: 10 residues within 4Å: Chain B: L.101, S.103, S.106, Y.107, S.108 Chain C: L.101, S.103, S.106, Y.107, S.108 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:S.103, B:Y.107, C:S.103, C:Y.107 GOL.7: 6 residues within 4Å: Chain A: K.6, L.8 Chain C: T.97, A.99, V.112 Ligands: GOL.2 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 10 residues within 4Å: Chain A: W.32, K.61, E.83, V.85 Chain B: K.61, E.63, H.81, E.83 Ligands: ACT.4, ACT.5 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.83 Salt bridges: A:K.61, B:K.61, B:H.81 SO4.8: 10 residues within 4Å: Chain C: W.32, K.61, E.83, V.85 Chain D: K.61, E.63, H.81, E.83 Ligands: ACT.9, ACT.10 4 PLIP interactions: 2 interactions with chain D, 2 interactions with chain C Salt bridges: D:K.61, D:H.81, C:K.61 Hydrogen bonds: C:E.83

4 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 9 residues within 4Å: Chain A: K.61, E.63, H.81, E.83 Chain B: W.32, K.61, E.83 Ligands: SO4.3, ACT.5 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:E.63, B:W.32 Salt bridges: A:K.61, B:K.61 ACT.5: 6 residues within 4Å: Chain B: F.24, W.32, K.61, E.63 Ligands: SO4.3, ACT.4 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.24 Salt bridges: B:K.61 ACT.9: 9 residues within 4Å: Chain C: K.61, E.63, H.81, E.83 Chain D: W.32, K.61, E.83 Ligands: SO4.8, ACT.10 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:E.63, D:W.32 Salt bridges: C:K.61, D:K.61 ACT.10: 6 residues within 4Å: Chain D: F.24, W.32, K.61, E.63 Ligands: SO4.8, ACT.9 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:F.24 Salt bridges: D:K.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saelices, L. et al., Structural Variants of Transthyretin. To Be Published

Release Date

2019-07-31

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin