SMTL ID : 6e78.1

Structure of Human Transthyretin Asp38Ala Mutant in Complex with Diflunisal

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x 1FL: 5-(2,4-DIFLUOROPHENYL)-2-HYDROXY-BENZOIC ACID(Non-covalent)

1FL.1: 15 residues within 4Å: Chain A: K.6, L.8, A.99, L.101, S.108 Chain C: K.6, L.8, A.99, A.100, L.101, S.108, T.109, T.110 Chain D: S.106 Ligands: 1FL.3 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:L.8, A:L.8, A:A.99, A:L.101, A:L.101 Hydrogen bonds: C:L.101, C:S.108, C:T.110, A:S.108 1FL.2: 16 residues within 4Å: Chain B: K.6, L.8, A.99, L.101, S.108, T.110 Chain C: S.106 Chain D: K.6, L.8, A.99, A.100, L.101, S.108, T.109, T.110 Ligands: 1FL.4 11 PLIP interactions: 5 interactions with chain D, 5 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: D:L.8, B:L.8, B:A.99, B:L.101, B:L.101 Hydrogen bonds: D:L.101, D:S.108, D:T.110, D:T.110, B:S.108, C:S.106 1FL.3: 15 residues within 4Å: Chain A: K.6, L.8, A.99, A.100, L.101, S.108, T.109, T.110 Chain B: S.106 Chain C: K.6, L.8, A.99, L.101, S.108 Ligands: 1FL.1 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:L.8, C:A.99, C:L.101, C:L.101, A:L.8 Hydrogen bonds: C:S.108, A:L.101, A:S.108, A:T.110 1FL.4: 16 residues within 4Å: Chain A: S.106 Chain B: K.6, L.8, A.99, A.100, L.101, S.108, T.109, T.110 Chain D: K.6, L.8, A.99, L.101, S.108, T.110 Ligands: 1FL.2 11 PLIP interactions: 5 interactions with chain D, 5 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: D:L.8, D:A.99, D:L.101, D:L.101, B:L.8 Hydrogen bonds: D:S.108, B:L.101, B:S.108, B:T.110, B:T.110, A:S.106

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Saelices, L. et al., Structural Variants of Transthyretin. To Be Published

Release Date

2019-07-31

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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