SMTL ID : 6e7i.1

Human ppGalNAcT2 I253A/L310A Mutant with EA2 and UDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x UDP: URIDINE-5'-DIPHOSPHATE(Non-covalent)

UDP.1: 19 residues within 4Å: Chain A: T.100, F.101, H.102, D.133, R.158, G.160, L.161, D.181, S.182, H.183, V.287, W.288, H.316, R.319, H.322, Y.324 Chain B: T.6, T.7 Ligands: MN.2 21 PLIP interactions: 17 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:H.102, A:D.133, A:R.158, A:S.182, A:S.182, A:S.182, B:T.7, B:T.7 Water bridges: A:R.165, A:R.319, A:R.319, A:R.319, A:H.322, B:T.6, B:T.6 Salt bridges: A:H.183, A:H.316, A:R.319, A:H.322, A:H.322 pi-Stacking: A:Y.324

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.2: 4 residues within 4Å: Chain A: D.181, H.183, H.316 Ligands: UDP.1 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.181, A:H.183, A:H.316, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schumann, B. et al., Bump-and-Hole Engineering Identifies Specific Substrates of Glycosyltransferases in Living Cells. Mol.Cell (2020)

Release Date

2020-01-29

Peptides

Polypeptide N-acetylgalactosaminyltransferase 2: A
EA2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
P

Polypeptide N-acetylgalactosaminyltransferase 2

EA2

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