SMTL ID : 6e7k.1 (1 other biounit)

Structure of the lipoprotein lipase GPIHBP1 complex that mediates plasma triglyceride hydrolysis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 4 residues within 4Å: Chain A: G.324, T.325, S.327, N.359 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.2: 5 residues within 4Å: Chain A: N.43, S.45, S.46, K.47, D.78 No protein-ligand interaction detected (PLIP)

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 6 residues within 4Å: Chain A: A.167, P.168, R.170, S.172, D.174, D.175 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:A.167, A:S.172, A:D.175, H2O.1, H2O.1

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 2 residues within 4Å: Chain B: N.58, L.59 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.59 Hydrogen bonds: B:N.58

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Birrane, G. et al., Structure of the lipoprotein lipase-GPIHBP1 complex that mediates plasma triglyceride hydrolysis. Proc. Natl. Acad. Sci. U.S.A. (2019)

Release Date

2018-12-19

Peptides

Lipoprotein lipase: A
Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Lipoprotein lipase

Glycosylphosphatidylinositol-anchored high density lipoprotein-binding protein 1

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