SMTL ID : 6e8f.1 (2 other biounits)

Crystal Structure of Human Protocadherin-15 EC3-5 CD2-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.99 Å

Oligo State

monomer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: N.128, Q.130, D.169, D.171, D.231 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:Q.130, A:D.169, A:D.169, A:D.171, A:D.231 CA.2: 7 residues within 4Å: Chain A: E.145, E.218, D.247, A.248, D.250, N.251, D.283 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.145, A:E.218, A:D.247, A:A.248, A:D.250 CA.3: 4 residues within 4Å: Chain A: E.145, D.216, E.218, D.250 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.145, A:D.216, A:E.218, A:D.250 CA.4: 6 residues within 4Å: Chain A: N.249, N.251, D.281, D.283, N.287, D.333 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.251, A:D.281, A:D.283, A:N.287, A:D.333

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 5 residues within 4Å: Chain A: D.126, E.127, N.129, Q.130, D.171 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.127, A:N.129, A:Q.130

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choudhary, D. et al., Structural determinants of protocadherin-15 mechanics and function in hearing and balance perception. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2019-07-31

Peptides

Protocadherin-15: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protocadherin-15

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