SMTL ID : 6e8y.1

Unliganded Human Glycerol 3-Phosphate Dehydrogenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: K.240, C.243, S.244, G.245, P.246, V.247 No protein-ligand interaction detected (PLIP)

1 x 3SY: 2,2-bis(hydroxymethyl)propane-1,3-diol(Non-covalent)

3SY.2: 10 residues within 4Å: Chain A: N.127, L.129, K.130, L.131, E.134, D.195, I.199, F.242, C.243, S.244 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:L.131, A:E.134, A:D.195, A:S.244, A:S.244, A:S.244 Water bridges: A:K.130, A:F.242

2 x K: POTASSIUM ION(Non-covalent)

K.3: 6 residues within 4Å: Chain A: A.26, A.27, L.29, A.30, F.32, P.34 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:A.26, A:A.27, A:L.29, A:F.32 K.4: 6 residues within 4Å: Chain B: A.26, A.27, L.29, A.30, F.32, P.34 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:A.26, B:L.29, B:F.32, H2O.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mydy, L.S. et al., Human Glycerol 3-Phosphate Dehydrogenase: X-ray Crystal Structures That Guide the Interpretation of Mutagenesis Studies. Biochemistry (2019)

Release Date

2019-01-30

Peptides

Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic

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