SMTL ID : 6eac.2 (3 other biounits)

Pseudomonas syringae SelO

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: R.184, D.253, N.254, D.263 Ligands: ANP.7 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.263, H2O.1

4 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: R.94, K.114, D.263, G.265 Ligands: ANP.7 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.263, A:D.263, H2O.5, H2O.6, H2O.7 CA.3: 5 residues within 4Å: Chain A: S.363, G.364, V.365, D.389, R.474 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:G.364, A:D.389, H2O.4, H2O.6, H2O.7 CA.4: 3 residues within 4Å: Chain A: E.411, N.412, G.413 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.411, H2O.4, H2O.7 CA.5: 3 residues within 4Å: Chain A: A.69, A.71, E.72 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:A.69, A:A.71, H2O.7

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 5 residues within 4Å: Chain A: R.94, A.129, V.130, S.133, R.166 Ligand excluded by PLIP

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.7: 22 residues within 4Å: Chain A: Y.78, Q.82, L.90, G.91, D.92, G.93, R.94, K.114, S.122, G.125, D.126, G.127, R.128, R.166, R.177, R.184, D.253, N.254, F.262, D.263 Ligands: MG.1, CA.2 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:G.91, A:G.93, A:R.94, A:R.94, A:R.94, A:K.114, A:D.126, A:D.126, A:D.126, A:G.127, A:R.128, A:R.166, A:R.177, A:R.177, A:R.184, A:R.184, A:N.254, A:N.254 Water bridges: A:Y.78, A:Y.78

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.8: 10 residues within 4Å: Chain A: F.14, M.76, L.97, E.100, D.110, Q.180, S.181, H.182, V.183, H.206 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.100, A:S.181, A:H.182, A:H.182 EDO.9: 4 residues within 4Å: Chain A: H.81, Y.86, Y.193 Ligands: PEG.14 No protein-ligand interaction detected (PLIP) EDO.10: 7 residues within 4Å: Chain A: A.44, L.45, D.47, N.103, D.104, A.105, E.107 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.47, A:D.104, A:A.105 EDO.11: 9 residues within 4Å: Chain A: L.147, G.148, I.149, K.239, Y.243, L.335, A.424, V.425, F.462 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.148 EDO.12: 2 residues within 4Å: Chain A: E.228, E.231 No protein-ligand interaction detected (PLIP) EDO.13: 6 residues within 4Å: Chain A: F.269, L.270, D.271, D.272, D.274, F.277 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.271, A:D.272

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.14: 7 residues within 4Å: Chain A: H.81, Y.193, W.299, S.302, A.303, Q.306 Ligands: EDO.9 No protein-ligand interaction detected (PLIP)

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.15: 8 residues within 4Å: Chain A: S.302, G.305, Q.306, T.309, V.314, L.317, R.318, I.321 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.321 Hydrogen bonds: A:Q.306 Water bridges: A:R.318, A:R.318 Salt bridges: A:R.318

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sreelatha, A. et al., Protein AMPylation by an Evolutionarily Conserved Pseudokinase. Cell (2018)

Release Date

2018-10-03

Peptides

SelO: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

SelO

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