SMTL ID : 6ead.1

CRYSTAL STRUCTURE OF HUMAN RESPIRATORY SYNCYTIAL VIRUS FUSION GLYCOPROTEIN INHIBITOR ESCAPE VARIANT F140I STABILIZED IN THE PREFUSION STATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-trimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.27 No protein-ligand interaction detected (PLIP) NAG.2: 3 residues within 4Å: Chain A: N.496, N.500 Ligands: NHE.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.496 NAG.6: 1 residues within 4Å: Chain B: N.27 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain B: N.496, N.500 Ligands: NHE.10 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.496 NAG.11: 1 residues within 4Å: Chain C: N.27 No protein-ligand interaction detected (PLIP) NAG.12: 3 residues within 4Å: Chain C: N.496, N.500 Ligands: NHE.15 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.496

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: L.273, N.276, N.277, R.364 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.276, A:N.277 Salt bridges: A:R.364 SO4.4: 3 residues within 4Å: Chain A: N.325, T.326, K.327 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.326, A:T.326, A:K.327 SO4.8: 4 residues within 4Å: Chain B: L.273, N.276, N.277, R.364 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.276, B:N.277 Salt bridges: B:R.364 SO4.9: 3 residues within 4Å: Chain B: N.325, T.326, K.327 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.326, B:T.326, B:K.327 SO4.13: 4 residues within 4Å: Chain C: L.273, N.276, N.277, R.364 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.276, C:N.277 Salt bridges: C:R.364 SO4.14: 3 residues within 4Å: Chain C: N.325, T.326, K.327 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.326, C:T.326, C:K.327

3 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.5: 8 residues within 4Å: Chain A: F.387, F.477, Y.478, D.479, V.482, N.496, I.499 Ligands: NAG.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.387, A:F.477 Hydrogen bonds: A:D.479, A:N.496 NHE.10: 8 residues within 4Å: Chain B: F.387, F.477, Y.478, D.479, V.482, N.496, I.499 Ligands: NAG.7 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.387, B:F.477 Hydrogen bonds: B:D.479, B:N.496 NHE.15: 8 residues within 4Å: Chain C: F.387, F.477, Y.478, D.479, V.482, N.496, I.499 Ligands: NAG.12 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.387, C:F.477 Hydrogen bonds: C:D.479, C:N.496

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Battles, M.B. et al., Structural Basis for Respiratory Syncytial Virus Fusion Inhibitor Resistance. To be published

Release Date

2019-08-07

Peptides

Fusion glycoprotein F0: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
F

C
F

Fusion glycoprotein F0