SMTL ID : 6eaf.1

CRYSTAL STRUCTURE OF HUMAN RESPIRATORY SYNCYTIAL VIRUS FUSION GLYCOPROTEIN INHIBITOR ESCAPE VARIANT G143S STABILIZED IN THE PREFUSION STATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.496, I.499, N.500 Ligands: NHE.9 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:N.496, A:I.499 Hydrogen bonds: A:N.496

19 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: F.137, R.339, Q.354 Ligands: NHE.10 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: S.443, K.445, G.464, K.465, S.466 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: N.426, R.429 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: L.273, N.276, N.277, R.364 Ligand excluded by PLIP SO4.6: 1 residues within 4Å: Chain A: K.470 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: R.235 Chain B: R.235 Chain C: R.235 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain A: K.293, E.294 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain B: F.137, R.339, Q.354 Ligands: NHE.19 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain B: N.276, N.277, R.364 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain B: S.443, K.445, G.464, K.465, S.466 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain B: Q.34, K.470 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain B: N.426, K.427, N.428, R.429 Ligands: SO4.17 Ligand excluded by PLIP SO4.16: 2 residues within 4Å: Chain B: K.293, E.294 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain B: N.444, G.446, K.461 Ligands: SO4.15 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain C: F.137, R.339, Q.354 Ligands: NHE.26 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain C: S.443, K.445, G.464, K.465, S.466 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain C: N.426, R.429 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain C: L.273, N.276, N.277, R.364 Ligand excluded by PLIP SO4.24: 2 residues within 4Å: Chain C: Q.462, E.463 Ligand excluded by PLIP

6 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.9: 8 residues within 4Å: Chain A: F.387, F.477, Y.478, D.479, V.482, N.496, I.499 Ligands: NAG.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.387, A:F.477, A:Y.478 Hydrogen bonds: A:D.479 NHE.10: 7 residues within 4Å: Chain A: F.137, G.139, F.140, Q.354, F.488 Chain B: F.140 Ligands: SO4.2 8 PLIP interactions: 1 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:F.140, A:F.137, A:F.137, A:F.140, A:F.488 Hydrogen bonds: A:F.137, A:G.139, A:F.140 NHE.18: 8 residues within 4Å: Chain B: F.387, F.477, Y.478, D.479, V.482, N.496, I.499, L.503 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.387, B:F.477 Hydrogen bonds: B:D.479 NHE.19: 8 residues within 4Å: Chain B: F.137, G.139, F.140, Q.354, F.488 Chain C: F.140 Ligands: SO4.11, NHE.26 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:F.137, B:F.488, C:F.140 Hydrogen bonds: B:F.140, B:Q.354 NHE.25: 7 residues within 4Å: Chain C: F.387, F.477, Y.478, D.479, N.496, I.499, L.503 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.387, C:Y.478 Hydrogen bonds: C:D.479, C:N.496 NHE.26: 8 residues within 4Å: Chain A: F.140 Chain C: F.137, G.139, F.140, Q.354, F.488 Ligands: NHE.19, SO4.20 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:F.137, C:F.137, C:F.140, C:F.488, A:F.140 Hydrogen bonds: C:G.139, C:F.140

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Battles, M.B. et al., Structural Basis for Respiratory Syncytial Virus Fusion Inhibitor Resistance. To be published

Release Date

2019-08-07

Peptides

Fusion glycoprotein F0: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fusion glycoprotein F0

Related Entries With Identical Sequence