SMTL ID : 6eah.1

CRYSTAL STRUCTURE OF HUMAN RESPIRATORY SYNCYTIAL VIRUS FUSION GLYCOPROTEIN INHIBITOR ESCAPE VARIANT K394R-S398L STABILIZED IN THE PREFUSION STATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 9 residues within 4Å: Chain C: F.387, F.477, Y.478, D.479, V.482, N.496, I.499, N.500, L.503 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:D.479, C:V.482, C:I.499, C:L.503, C:F.387, C:Y.478 Hydrogen bonds: C:F.477, C:D.479

20 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.106 Chain C: F.137, R.339, Q.354 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: S.443, K.445, G.464, K.465, S.466 Ligand excluded by PLIP SO4.4: 1 residues within 4Å: Chain A: S.186 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: N.444, G.446, K.461 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain A: L.273, N.276, N.277, R.364 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain A: L.193, D.194, K.226 Ligand excluded by PLIP SO4.8: 2 residues within 4Å: Chain A: K.293, E.294 Ligand excluded by PLIP SO4.9: 2 residues within 4Å: Chain A: F.137, R.339 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain A: F.137, G.139, Q.354 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain B: F.137, R.339, Q.354, E.356 Chain C: R.106 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain B: S.443, K.445, G.464, K.465, S.466 Ligand excluded by PLIP SO4.14: 2 residues within 4Å: Chain B: N.277, R.364 Ligand excluded by PLIP SO4.15: 5 residues within 4Å: Chain B: F.477, D.479, V.482, I.499, L.503 Ligand excluded by PLIP SO4.16: 8 residues within 4Å: Chain A: L.456, Y.457, Y.458 Chain B: W.52, S.146, A.147, S.150, M.370 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain B: F.137, G.139, F.140, Q.354 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain C: S.443, K.445, G.464, K.465, S.466 Ligand excluded by PLIP SO4.19: 1 residues within 4Å: Chain C: S.186 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain C: L.273, N.277, R.364 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain C: K.293, E.294, E.295 Ligand excluded by PLIP SO4.22: 2 residues within 4Å: Chain C: G.139, Q.354 Ligand excluded by PLIP

1 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.11: 8 residues within 4Å: Chain A: F.387, F.477, Y.478, D.479, V.482, N.496, I.499, L.503 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.387, A:F.387, A:F.477 Hydrogen bonds: A:D.479

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Battles, M.B. et al., Structural Basis for Respiratory Syncytial Virus Fusion Inhibitor Resistance. To be published

Release Date

2019-08-07

Peptides

Fusion glycoprotein F0: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Fusion glycoprotein F0