SMTL ID : 6eaj.1

CRYSTAL STRUCTURE OF HUMAN RESPIRATORY SYNCYTIAL VIRUS FUSION GLYCOPROTEIN INHIBITOR ESCAPE VARIANT T400A STABILIZED IN THE PREFUSION STATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-trimer

Ligands

33 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: R.106 Chain B: F.137, R.339, Q.354 Ligands: SO4.20 Ligand excluded by PLIP SO4.2: 4 residues within 4Å: Chain A: V.192, L.193, D.194, K.226 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: L.273, N.276, N.277, R.364 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: S.443, K.445, G.464, K.465, S.466 Ligand excluded by PLIP SO4.5: 9 residues within 4Å: Chain A: F.137, G.139, F.140, Q.354 Ligands: SO4.6, SO4.7, SO4.19, SO4.20, SO4.32 Ligand excluded by PLIP SO4.6: 8 residues within 4Å: Ligands: SO4.5, SO4.7, SO4.18, SO4.19, SO4.20, SO4.31, SO4.32, SO4.33 Ligand excluded by PLIP SO4.7: 10 residues within 4Å: Chain A: F.137 Chain C: F.140 Ligands: SO4.5, SO4.6, SO4.19, SO4.20, SO4.27, SO4.31, SO4.32, SO4.33 Ligand excluded by PLIP SO4.8: 8 residues within 4Å: Chain A: L.456, Y.457, Y.458 Chain C: R.49, W.52, S.146, A.147, M.370 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain A: N.444, K.445, G.446, K.461 Ligand excluded by PLIP SO4.10: 2 residues within 4Å: Chain A: N.426, N.428 Ligand excluded by PLIP SO4.11: 5 residues within 4Å: Chain A: K.75, S.215, N.216, I.217, E.218 Ligand excluded by PLIP SO4.14: 5 residues within 4Å: Chain B: R.106 Chain C: F.137, R.339, Q.354 Ligands: SO4.33 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain B: V.192, L.193, D.194, K.226 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain B: L.273, N.276, N.277, R.364 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain B: S.443, K.445, G.464, K.465, S.466 Ligand excluded by PLIP SO4.18: 9 residues within 4Å: Chain B: F.137, G.139, F.140, Q.354 Ligands: SO4.6, SO4.19, SO4.20, SO4.32, SO4.33 Ligand excluded by PLIP SO4.19: 8 residues within 4Å: Ligands: SO4.5, SO4.6, SO4.7, SO4.18, SO4.20, SO4.31, SO4.32, SO4.33 Ligand excluded by PLIP SO4.20: 10 residues within 4Å: Chain A: F.140 Chain B: F.137 Ligands: SO4.1, SO4.5, SO4.6, SO4.7, SO4.18, SO4.19, SO4.32, SO4.33 Ligand excluded by PLIP SO4.21: 8 residues within 4Å: Chain A: R.49, W.52, S.146, A.147, M.370 Chain B: L.456, Y.457, Y.458 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain B: N.444, K.445, G.446, K.461 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain B: N.426, N.428 Ligand excluded by PLIP SO4.24: 5 residues within 4Å: Chain B: K.75, S.215, N.216, I.217, E.218 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain A: F.137, R.339, Q.354 Chain C: R.106 Ligands: SO4.7 Ligand excluded by PLIP SO4.28: 4 residues within 4Å: Chain C: V.192, L.193, D.194, K.226 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain C: L.273, N.276, N.277, R.364 Ligand excluded by PLIP SO4.30: 5 residues within 4Å: Chain C: S.443, K.445, G.464, K.465, S.466 Ligand excluded by PLIP SO4.31: 9 residues within 4Å: Chain C: F.137, G.139, F.140, Q.354 Ligands: SO4.6, SO4.7, SO4.19, SO4.32, SO4.33 Ligand excluded by PLIP SO4.32: 8 residues within 4Å: Ligands: SO4.5, SO4.6, SO4.7, SO4.18, SO4.19, SO4.20, SO4.31, SO4.33 Ligand excluded by PLIP SO4.33: 10 residues within 4Å: Chain B: F.140 Chain C: F.137 Ligands: SO4.6, SO4.7, SO4.14, SO4.18, SO4.19, SO4.20, SO4.31, SO4.32 Ligand excluded by PLIP SO4.34: 8 residues within 4Å: Chain B: R.49, W.52, S.146, A.147, M.370 Chain C: L.456, Y.457, Y.458 Ligand excluded by PLIP SO4.35: 4 residues within 4Å: Chain C: N.444, K.445, G.446, K.461 Ligand excluded by PLIP SO4.36: 2 residues within 4Å: Chain C: N.426, N.428 Ligand excluded by PLIP SO4.37: 5 residues within 4Å: Chain C: K.75, S.215, N.216, I.217, E.218 Ligand excluded by PLIP

3 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.12: 7 residues within 4Å: Chain A: F.387, F.477, Y.478, D.479, N.496, I.499, L.503 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.387, A:F.477, A:Y.478 Hydrogen bonds: A:D.479 NHE.25: 7 residues within 4Å: Chain B: F.387, F.477, Y.478, D.479, N.496, I.499, L.503 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.387, B:F.477, B:Y.478 Hydrogen bonds: B:D.479 NHE.38: 7 residues within 4Å: Chain C: F.387, F.477, Y.478, D.479, N.496, I.499, L.503 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.387, C:F.477, C:Y.478 Hydrogen bonds: C:D.479

3 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.13: 4 residues within 4Å: Chain A: Q.94, K.293, E.294, E.295 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.94, A:E.294, A:E.295 TAR.26: 4 residues within 4Å: Chain B: Q.94, K.293, E.294, E.295 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.94, B:E.294, B:E.295 TAR.39: 4 residues within 4Å: Chain C: Q.94, K.293, E.294, E.295 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:Q.94, C:E.294, C:E.295

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Battles, M.B. et al., Structural Basis for Respiratory Syncytial Virus Fusion Inhibitor Resistance. To be published

Release Date

2019-08-07

Peptides

Fusion glycoprotein F0: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
F

C
F

Fusion glycoprotein F0

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