- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-trimer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 3 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)
NHE.7: 8 residues within 4Å:- Chain A: F.387, F.477, Y.478, D.479, V.482, N.496, I.499, L.503
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.387, A:F.387, A:F.477
- Hydrogen bonds: A:D.479, A:N.496
NHE.16: 8 residues within 4Å:- Chain B: F.387, F.477, Y.478, D.479, V.482, N.496, I.499, L.503
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:F.387, B:F.387, B:F.477
- Hydrogen bonds: B:D.479, B:N.496
NHE.25: 8 residues within 4Å:- Chain C: F.387, F.477, Y.478, D.479, V.482, N.496, I.499, L.503
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:F.387, C:F.387, C:F.477
- Hydrogen bonds: C:D.479, C:N.496
- 3 x NI: NICKEL (II) ION(Non-covalent)
NI.8: 3 residues within 4Å:- Chain A: Y.458
- Chain C: W.52, S.146
No protein-ligand interaction detected (PLIP)NI.17: 3 residues within 4Å:- Chain A: W.52, S.146
- Chain B: Y.458
No protein-ligand interaction detected (PLIP)NI.26: 3 residues within 4Å:- Chain B: W.52, S.146
- Chain C: Y.458
No protein-ligand interaction detected (PLIP)- 3 x 5NK: 2-[[2-[[1-(2-azanylethyl)piperidin-4-yl]amino]-4-methyl-benzimidazol-1-yl]methyl]-6-methyl-pyridin-3-ol(Non-covalent)
5NK.9: 15 residues within 4Å:- Chain A: F.140, D.486, F.488, D.489, K.498
- Chain B: M.396, D.486, E.487, F.488, K.498
- Chain C: F.140, D.486, F.488
- Ligands: 5NK.18, 5NK.27
24 PLIP interactions:11 interactions with chain A, 6 interactions with chain B, 7 interactions with chain C- Hydrophobic interactions: A:F.140, A:F.140, A:F.488, A:F.488, A:F.488, A:D.489, B:F.488, B:F.488, C:F.140, C:F.140, C:F.140, C:F.488
- Hydrogen bonds: A:K.498, B:K.498, B:K.498
- Salt bridges: A:D.486, A:E.487, B:D.486, B:E.487, C:D.486, C:E.487
- pi-Stacking: A:F.488, A:F.488, C:F.488
5NK.18: 15 residues within 4Å:- Chain A: F.140, D.486, F.488
- Chain B: F.140, D.486, F.488, D.489, K.498
- Chain C: M.396, D.486, E.487, F.488, K.498
- Ligands: 5NK.9, 5NK.27
24 PLIP interactions:7 interactions with chain A, 11 interactions with chain B, 6 interactions with chain C- Hydrophobic interactions: A:F.140, A:F.140, A:F.140, A:F.488, B:F.140, B:F.140, B:F.488, B:F.488, B:F.488, B:D.489, C:F.488, C:F.488
- Salt bridges: A:D.486, A:E.487, B:D.486, B:E.487, C:D.486, C:E.487
- pi-Stacking: A:F.488, B:F.488, B:F.488
- Hydrogen bonds: B:K.498, C:K.498, C:K.498
5NK.27: 15 residues within 4Å:- Chain A: M.396, D.486, E.487, F.488, K.498
- Chain B: F.140, D.486, F.488
- Chain C: F.140, D.486, F.488, D.489, K.498
- Ligands: 5NK.9, 5NK.18
24 PLIP interactions:6 interactions with chain A, 7 interactions with chain B, 11 interactions with chain C- Hydrophobic interactions: A:F.488, A:F.488, B:F.140, B:F.140, B:F.140, B:F.488, C:F.140, C:F.140, C:F.488, C:F.488, C:F.488, C:D.489
- Hydrogen bonds: A:D.486, A:K.498, C:K.498
- Salt bridges: A:D.486, A:E.487, B:D.486, B:E.487, C:D.486, C:E.487
- pi-Stacking: B:F.488, C:F.488, C:F.488
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Battles, M.B. et al., Structural Basis for Respiratory Syncytial Virus Fusion Inhibitor Resistance. To be published
- Release Date
- 2019-08-07
- Peptides
- Fusion glycoprotein F0: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
FC
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.60 Å
- Oligo State
- homo-trimer
- Ligands
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 3 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)
- 3 x NI: NICKEL (II) ION(Non-covalent)
- 3 x 5NK: 2-[[2-[[1-(2-azanylethyl)piperidin-4-yl]amino]-4-methyl-benzimidazol-1-yl]methyl]-6-methyl-pyridin-3-ol(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Battles, M.B. et al., Structural Basis for Respiratory Syncytial Virus Fusion Inhibitor Resistance. To be published
- Release Date
- 2019-08-07
- Peptides
- Fusion glycoprotein F0: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
FC
F