SMTL ID : 6eay.1

Structural Basis for Broad Neutralization of Ebolaviruses by an Antibody Targeting the Glycoprotein Fusion Loop

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.72 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.1: 7 residues within 4Å: Chain C: Q.7, P.8, N.62, T.65 Chain D: A.45, E.125, G.126 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:A.45

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 1 residues within 4Å: Chain D: N.9 No protein-ligand interaction detected (PLIP) NAG.3: 3 residues within 4Å: Chain D: N.226, Y.230, T.231 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:T.231

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Janus, B.M. et al., Structural basis for broad neutralization of ebolaviruses by an antibody targeting the glycoprotein fusion loop. Nat Commun (2018)

Release Date

2018-10-10

Peptides

CA45 light chain: A
CA45 heavy chain: B
Envelope glycoprotein: C
Envelope glycoprotein: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
H

C
A

D
B

CA45 light chain

CA45 heavy chain

Envelope glycoprotein

Envelope glycoprotein