SMTL ID : 6eb1.1

HIV-1 Integrase Catalytic Core Domain Complexed with Allosteric Inhibitor (2S)-tert-butoxy[3-(3,4-dihydro-2H-1-benzopyran-6-yl)-1-phenylisoquinolin-4-yl]acetic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x J3M: (2S)-tert-butoxy[3-(3,4-dihydro-2H-1-benzopyran-6-yl)-1-phenylisoquinolin-4-yl]acetic acid(Non-covalent)

J3M.1: 14 residues within 4Å: Chain A: Q.66, Y.70, L.73, T.95, T.96, A.99, A.100, W.103 Chain B: Q.139, A.140, E.141, H.142, T.145, M.149 10 PLIP interactions: 5 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:T.145, A:Q.66, A:Y.70, A:T.95, A:T.96, A:A.99 Hydrogen bonds: B:E.141, B:H.142, B:T.145 Salt bridges: B:H.142 J3M.2: 14 residues within 4Å: Chain A: Q.139, A.140, E.141, H.142, T.145, M.149 Chain B: Q.66, Y.70, L.73, T.95, T.96, A.99, A.100, W.103 11 PLIP interactions: 5 interactions with chain B, 6 interactions with chain A Hydrophobic interactions: B:Q.66, B:Y.70, B:T.95, B:T.96, B:A.99, A:T.145 Hydrogen bonds: A:E.141, A:H.142, A:T.145, A:T.145 Salt bridges: A:H.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilson, T.A. et al., An Isoquinoline Scaffold as a Novel Class of Allosteric HIV-1 Integrase Inhibitors. ACS Med Chem Lett (2019)

Release Date

2019-03-06

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Integrase

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