SMTL ID : 6eb2.1

HIV-1 Integrase Catalytic Core Domain Complexed with Allosteric Inhibitor (2S)-[1-(1-benzyl-1H-pyrazol-4-yl)-3-(3,4-dihydro-2H-1-benzopyran-6-yl)isoquinolin-4-yl](tert-butoxy)acetic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

homo-dimer

Ligands

2 x J3P: (2S)-[1-(1-benzyl-1H-pyrazol-4-yl)-3-(3,4-dihydro-2H-1-benzopyran-6-yl)isoquinolin-4-yl](tert-butoxy)acetic acid(Non-covalent)

J3P.1: 13 residues within 4Å: Chain A: Q.66, Y.70, L.73, T.95, T.96, A.99, A.100, W.103 Chain B: A.140, E.141, H.142, T.145, M.149 10 PLIP interactions: 6 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:Q.66, A:Y.70, A:T.95, A:A.99, A:A.99, A:W.103 Hydrogen bonds: B:E.141, B:H.142, B:T.145 Salt bridges: B:H.142 J3P.2: 13 residues within 4Å: Chain A: A.140, E.141, H.142, T.145, M.149 Chain B: Q.66, Y.70, L.73, T.95, T.96, A.99, A.100, W.103 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:E.141, A:H.142, A:T.145, A:T.145 Salt bridges: A:H.142 Hydrophobic interactions: B:Q.66, B:Y.70, B:T.95, B:A.99, B:A.99, B:W.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wilson, T.A. et al., An Isoquinoline Scaffold as a Novel Class of Allosteric HIV-1 Integrase Inhibitors. ACS Med Chem Lett (2019)

Release Date

2019-03-06

Peptides

Integrase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Integrase

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