SMTL ID : 6ebn.1

Crystal structure of Psilocybe cubensis noncanonical aromatic amino acid decarboxylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

homo-dimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: D.60, N.61, A.62, F.63 Chain B: T.690, N.691, F.693 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.61, B:N.691, B:N.691 Water bridges: A:D.60, A:D.60 GOL.2: 5 residues within 4Å: Chain A: L.420, R.421, E.422, H.591, Q.592 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.421, A:E.422, A:E.422 Water bridges: A:E.422 GOL.3: 8 residues within 4Å: Chain A: P.924, Y.925, P.934, L.935, H.936, D.937, I.938, Q.941 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.937, A:Q.941 GOL.12: 7 residues within 4Å: Chain A: T.690, N.691, F.693 Chain B: D.60, N.61, A.62, F.63 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.691, B:N.61 GOL.13: 4 residues within 4Å: Chain B: L.420, R.421, E.422, H.591 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.421, B:E.422 Water bridges: B:E.423

12 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 6 residues within 4Å: Chain A: H.723, T.724, H.738, T.739, T.741, G.747 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.723, A:T.724, A:T.724, A:T.739 FMT.5: 1 residues within 4Å: Chain A: H.430 No protein-ligand interaction detected (PLIP) FMT.6: 5 residues within 4Å: Chain A: S.214, V.215, K.216, K.222, R.247 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.216, A:K.222, A:K.222 FMT.7: 3 residues within 4Å: Chain A: P.165, S.239, R.457 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.457, A:R.457 FMT.8: 3 residues within 4Å: Chain A: R.197, E.202, R.210 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.197, A:R.197, A:R.210, A:R.210 FMT.9: 4 residues within 4Å: Chain A: K.665, L.670, V.671, G.672 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.672 FMT.14: 6 residues within 4Å: Chain B: H.723, T.724, H.738, T.739, T.741, G.747 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.724 FMT.15: 5 residues within 4Å: Chain B: S.214, V.215, K.216, K.222, R.247 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.216 FMT.16: 2 residues within 4Å: Chain B: S.239, R.457 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.239, B:R.457, B:R.457 FMT.17: 3 residues within 4Å: Chain B: R.197, E.202, R.210 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.197, B:R.197, B:R.210, B:R.210 Water bridges: B:K.226, B:K.226 FMT.18: 6 residues within 4Å: Chain B: T.537, T.538, S.539, D.608, N.611, R.713 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.713, B:R.713 FMT.19: 3 residues within 4Å: Chain B: T.662, V.671, G.672 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:G.672 Water bridges: B:T.662

4 x NA: SODIUM ION(Non-functional Binders)

NA.10: 4 residues within 4Å: Chain A: Q.629, S.632, E.638, D.971 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.638 NA.11: 3 residues within 4Å: Chain A: E.824, D.825, M.930 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.824, A:D.825 NA.20: 4 residues within 4Å: Chain B: Q.629, S.632, E.638, D.971 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.971 Water bridges: B:S.632, B:T.634 NA.21: 3 residues within 4Å: Chain B: E.824, D.825, M.930 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:M.930 Water bridges: B:S.820

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torrens-Spence, M.P. et al., Monoamine Biosynthesis via a Noncanonical Calcium-Activatable Aromatic Amino Acid Decarboxylase in Psilocybin Mushroom. ACS Chem. Biol. (2018)

Release Date

2018-12-12

Peptides

non canonical aromatic amino acid decarboxylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

non canonical aromatic amino acid decarboxylase