SMTL ID : 6ebu.1

Crystal structure of Aquifex aeolicus LpxE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.37 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: K.79, R.86, P.106, S.107, G.108, D.109, R.143, H.149 Ligands: BOG.5 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.108, A:D.109, A:D.109 Water bridges: A:D.109 Salt bridges: A:K.79, A:R.86, A:R.143, A:H.149

5 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 2 residues within 4Å: Chain A: L.30, F.33 No protein-ligand interaction detected (PLIP) BOG.3: 6 residues within 4Å: Chain A: I.22, F.114, F.137, G.140, Y.141, F.155 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.114, A:F.137, A:F.137, A:F.155 BOG.4: 6 residues within 4Å: Chain A: K.79, R.86, P.99, H.101, W.102, R.103 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.101, A:R.103 BOG.5: 6 residues within 4Å: Chain A: S.42, F.98, D.109, R.143 Ligands: SO4.1, BOG.6 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.98 Water bridges: A:D.109, A:D.109 BOG.6: 4 residues within 4Å: Chain A: S.42, G.43, Y.44 Ligands: BOG.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.44 Hydrogen bonds: A:G.43

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, J. et al., The Lipid A 1-Phosphatase, LpxE, Functionally Connects Multiple Layers of Bacterial Envelope Biogenesis. Mbio (2019)

Release Date

2019-06-26

Peptides

LpxE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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LpxE