SMTL ID : 6ebv.1 (1 other biounit)

Staphylococcus aureus Type II pantothenate kinase in complex with ADP and pantothenate analog Deoxy-N7-Pan

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: G.8, G.9, T.10, L.11, K.13, G.98, T.99, G.121, G.122, Q.125, Y.137, G.224, S.225, S.226, H.228 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:G.9, A:T.10, A:T.10, A:T.10, A:L.11, A:T.99, A:T.99, A:G.121, A:S.225, A:S.225, A:S.226 Salt bridges: A:K.13, A:K.13 pi-Stacking: A:Y.137, A:Y.137 ADP.3: 16 residues within 4Å: Chain B: G.8, G.9, T.10, L.11, K.13, L.28, G.98, T.99, G.121, G.122, Q.125, Y.137, G.224, S.225, S.226, H.228 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:D.6, B:G.9, B:T.10, B:T.10, B:T.10, B:L.11, B:L.11, B:T.99, B:G.121, B:Y.137, B:S.225, B:S.225 Salt bridges: B:K.13, B:K.13 pi-Stacking: B:Y.137, B:Y.137

2 x 27Q: N-heptyl-N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alaninamide(Non-covalent)

27Q.2: 16 residues within 4Å: Chain A: E.70, F.71, G.100, T.101, S.102, R.113, G.116, I.117 Chain B: V.156, I.159, I.167, L.171, T.172, A.173, E.202, Y.240 13 PLIP interactions: 9 interactions with chain B, 4 interactions with chain A Hydrophobic interactions: B:V.156, B:I.159, B:I.167, B:L.171, B:E.202, B:Y.240, B:Y.240, A:F.71 Hydrogen bonds: B:T.172, B:A.173, A:G.100, A:R.113, A:R.113 27Q.4: 16 residues within 4Å: Chain A: I.159, I.167, L.171, T.172, A.173, E.202, T.206, Y.240 Chain B: E.70, F.71, G.100, T.101, S.102, R.113, G.116, I.117 11 PLIP interactions: 7 interactions with chain A, 4 interactions with chain B Hydrophobic interactions: A:I.167, A:L.171, A:E.202, A:Y.240, A:Y.240, B:F.71 Hydrogen bonds: A:T.172, A:A.173, B:G.100, B:R.113, B:R.113

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, Y. et al., Structure-based identification of uncompetitive inhibitors for Staphylococcus aureus pantothenate kinase. To Be Published

Release Date

2019-08-07

Peptides

Type II pantothenate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Type II pantothenate kinase

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