SMTL ID : 6edr.2 (1 other biounit)

Crystal Structure of Human CD38 in Complex with 4'-Thioribose NAD+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x ZNA: [[(2~{R},3~{S},4~{R},5~{R})-5-(3-aminocarbonylpyridin-1-ium-1-yl)-3,4-bis(oxidanyl)thiolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl hydrogen phosphate(Non-covalent)

ZNA.1: 13 residues within 4Å: Chain A: W.82, S.83, R.84, L.102, E.103, D.113, V.142, W.146, S.150, S.177, T.178, F.179, E.183 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.146 Hydrogen bonds: A:S.83, A:R.84, A:E.103, A:D.113, A:S.150, A:T.178, A:T.178, A:F.179 Water bridges: A:L.102 Salt bridges: A:R.84 pi-Stacking: A:W.146, A:W.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai, Z. et al., Facile chemoenzymatic synthesis of a novel stable mimic of NAD. Chem Sci (2018)

Release Date

2018-11-21

Peptides

ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1

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