- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x NA: SODIUM ION(Non-functional Binders)
- 10 x FMT: FORMIC ACID(Non-functional Binders)
FMT.7: 5 residues within 4Å:- Chain A: R.46, Y.49, S.50, Q.105
- Ligands: FMT.8
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.46, A:R.46, A:Q.105
FMT.8: 4 residues within 4Å:- Chain A: R.46, S.50, N.51
- Ligands: FMT.7
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.51
FMT.9: 2 residues within 4Å:- Chain A: S.50, Q.52
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.50, A:Q.52
FMT.10: 7 residues within 4Å:- Chain A: E.7, D.33, S.35, D.96, A.98, N.100
- Ligands: NA.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.35, A:D.96, A:N.100
- Water bridges: A:A.98
FMT.11: 10 residues within 4Å:- Chain A: T.6, E.7, R.8, P.9, V.10, T.32, D.33, N.34, S.35
- Ligands: NA.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.34
- Water bridges: A:R.8, A:R.8, A:T.32
FMT.18: 5 residues within 4Å:- Chain B: R.46, Y.49, S.50, Q.105
- Ligands: FMT.19
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.46, B:R.46, B:Q.105
FMT.19: 4 residues within 4Å:- Chain B: R.46, S.50, N.51
- Ligands: FMT.18
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:N.51
FMT.20: 2 residues within 4Å:- Chain B: S.50, Q.52
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.50, B:Q.52
FMT.21: 7 residues within 4Å:- Chain B: E.7, D.33, S.35, D.96, A.98, N.100
- Ligands: NA.12
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.35, B:N.100
- Water bridges: B:A.98
FMT.22: 10 residues within 4Å:- Chain B: T.6, E.7, R.8, P.9, V.10, T.32, D.33, N.34, S.35
- Ligands: NA.12
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.34
- Water bridges: B:R.8, B:R.8, B:T.32
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bensing, B.A. et al., Origins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation. Nat Commun (2022)
- Release Date
- 2020-02-19
- Peptides
- Platelet binding protein GspB - Siglec domain: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.30 Å
- Oligo State
- homo-dimer
- Ligands
- 12 x NA: SODIUM ION(Non-functional Binders)
- 10 x FMT: FORMIC ACID(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Bensing, B.A. et al., Origins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation. Nat Commun (2022)
- Release Date
- 2020-02-19
- Peptides
- Platelet binding protein GspB - Siglec domain: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A