SMTL ID : 6efb.1

GspB Siglec domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: R.56, Y.89, T.90, R.91 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.56, A:T.90, A:T.90, A:R.91, A:R.91

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 6 residues within 4Å: Chain A: D.6, E.8, D.34, N.35, D.97, N.101 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.6, A:D.6, A:E.8, A:D.34, A:D.34

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 2 residues within 4Å: Chain A: N.133, N.165 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.133, A:N.165 Water bridges: A:Y.130, A:N.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bensing, B.A. et al., Origins of glycan selectivity in streptococcal Siglec-like adhesins suggest mechanisms of receptor adaptation. Nat Commun (2022)

Release Date

2020-02-19

Peptides

SK150 siglec + Unique: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SK150 siglec + Unique