SMTL ID : 6efy.1

Crystal Structure of DIP-Alpha Ig1-3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 4 residues within 4Å: Chain A: S.8, S.10, N.11, F.98 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.98 NAG-NAG-FUC.3: 4 residues within 4Å: Chain B: S.8, S.10, N.11, F.98 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.98

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: S.113, S.114, R.125, T.127 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.114, A:S.114, A:R.125, A:T.127 GOL.4: 4 residues within 4Å: Chain B: S.113, S.114, R.125, T.127 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.114, B:S.114, B:R.125, B:T.127, B:T.127

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cosmanescu, F. et al., Neuron-Subtype-Specific Expression, Interaction Affinities, and Specificity Determinants of DIP/Dpr Cell Recognition Proteins. Neuron (2018)

Release Date

2018-11-28

Peptides

Dpr-interacting protein alpha, isoform A: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Dpr-interacting protein alpha, isoform A