SMTL ID : 6ega.1 (1 other biounit)

IRAK4 in complex with a type II inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

homo-dimer

Ligands

2 x J8A: 3-{2-[(cyclopropanecarbonyl)amino][1,3]thiazolo[5,4-b]pyridin-5-yl}-N-{4-[(piperazin-1-yl)methyl]-3-(trifluoromethyl)phenyl}benzamide(Non-covalent)

J8A.1: 22 residues within 4Å: Chain A: M.44, V.52, A.63, K.65, E.85, V.88, M.89, L.97, V.98, Y.114, V.115, Y.116, M.117, G.120, L.154, I.160, H.161, L.170, I.179, S.180, D.181, F.182 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.52, A:A.63, A:K.65, A:E.85, A:Y.114, A:Y.116, A:L.170, A:D.181 Hydrogen bonds: A:E.85, A:M.117, A:M.117, A:I.160, A:D.181 Salt bridges: A:D.181 pi-Stacking: A:Y.114, A:F.182 pi-Cation interactions: A:H.161 Halogen bonds: A:I.179 J8A.7: 19 residues within 4Å: Chain B: M.44, A.63, K.65, E.85, M.89, V.98, Y.114, V.115, Y.116, M.117, G.120, L.154, I.160, H.161, L.170, I.179, S.180, D.181, F.182 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:K.65, B:E.85, B:V.98, B:V.98, B:Y.114, B:Y.116, B:L.170, B:D.181 Hydrogen bonds: B:E.85, B:E.85, B:M.117, B:M.117, B:D.181 Salt bridges: B:D.181 pi-Stacking: B:Y.114 Halogen bonds: B:I.179

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: T.217, K.219, K.293 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.217 Salt bridges: A:K.293 SO4.8: 3 residues within 4Å: Chain B: T.217, K.219, K.293 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.217 Salt bridges: B:K.219, B:K.293

6 x CO: COBALT (II) ION(Non-covalent)

CO.3: 1 residues within 4Å: Chain A: H.138 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.138 CO.4: 2 residues within 4Å: Chain A: H.242 Chain B: K.260 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.242 CO.5: 2 residues within 4Å: Chain A: K.260 Chain B: H.242 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.242 CO.6: 2 residues within 4Å: Chain A: E.156, H.158 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.158 CO.9: 1 residues within 4Å: Chain B: H.138 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.138 CO.10: 3 residues within 4Å: Chain B: H.18, S.19, E.24 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, L. et al., Conformational flexibility and inhibitor binding to unphosphorylated interleukin-1 receptor-associated kinase 4 (IRAK4). J.Biol.Chem. (2019)

Release Date

2019-02-20

Peptides

Interleukin-1 receptor-associated kinase 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Interleukin-1 receptor-associated kinase 4

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