SMTL ID : 6ehc.1 (1 other biounit)

OmpUdeltaN (N-terminus deletion mutant of OmpU), outer membrane protein of Vibrio cholerae

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-trimer

Ligands

18 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.1: 1 residues within 4Å: Ligands: C8E.2 No protein-ligand interaction detected (PLIP) C8E.2: 4 residues within 4Å: Chain A: I.266, Y.282 Ligands: C8E.1, C8E.3 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.266 C8E.3: 4 residues within 4Å: Chain A: I.266, F.284 Ligands: C8E.2, C8E.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.266, A:F.284 C8E.4: 4 residues within 4Å: Chain A: F.264, F.284, L.286 Ligands: C8E.3 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.264, A:F.264, A:F.284, A:L.286 C8E.5: 3 residues within 4Å: Chain A: L.235, Y.250, D.262 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.235 C8E.6: 1 residues within 4Å: Chain A: F.219 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.219 C8E.7: 1 residues within 4Å: Ligands: C8E.8 No protein-ligand interaction detected (PLIP) C8E.8: 4 residues within 4Å: Chain B: I.266, Y.282 Ligands: C8E.7, C8E.9 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:I.266 C8E.9: 4 residues within 4Å: Chain B: I.266, F.284 Ligands: C8E.8, C8E.10 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:I.266, B:F.284 C8E.10: 4 residues within 4Å: Chain B: F.264, F.284, L.286 Ligands: C8E.9 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:F.264, B:F.264, B:F.284, B:L.286 C8E.11: 3 residues within 4Å: Chain B: L.235, Y.250, D.262 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.235 C8E.12: 1 residues within 4Å: Chain B: F.219 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:F.219 C8E.13: 1 residues within 4Å: Ligands: C8E.14 No protein-ligand interaction detected (PLIP) C8E.14: 4 residues within 4Å: Chain C: I.266, Y.282 Ligands: C8E.13, C8E.15 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:I.266 C8E.15: 4 residues within 4Å: Chain C: I.266, F.284 Ligands: C8E.14, C8E.16 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:I.266, C:F.284 C8E.16: 4 residues within 4Å: Chain C: F.264, F.284, L.286 Ligands: C8E.15 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:F.264, C:F.264, C:F.284, C:L.286 C8E.17: 3 residues within 4Å: Chain C: L.235, Y.250, D.262 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:L.235 C8E.18: 1 residues within 4Å: Chain C: F.219 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:F.219

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pathania, M. et al., Unusual Constriction Zones in the Major Porins OmpU and OmpT from Vibrio cholerae. Structure (2018)

Release Date

2018-04-25

Peptides

Outer membrane protein U: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Outer membrane protein U

Related Entries With Identical Sequence