SMTL ID : 6ei3.1

Crystal structure of auto inhibited POT family peptide transporter

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

17 x 78M: (2S)-2,3-DIHYDROXYPROPYL(7Z)-PENTADEC-7-ENOATE(Non-covalent)

78M.1: 7 residues within 4Å: Chain A: Y.76, T.77, I.80, W.81, L.84, A.184, W.187 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.80, A:L.84, A:A.184, A:W.187, A:W.187, A:W.187 78M.2: 8 residues within 4Å: Chain A: T.368, F.484, A.487, L.488, G.491, L.492, R.495 Ligands: 78M.9 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.368, A:A.487, A:L.488 Water bridges: A:R.365, A:R.365 78M.3: 7 residues within 4Å: Chain A: S.169, W.170, G.173, I.177, L.178, I.181 Ligands: 78M.11 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.170, A:I.177, A:L.178, A:I.181 Hydrogen bonds: A:L.166, A:S.169 78M.4: 4 residues within 4Å: Chain A: R.321, A.397, W.398 Ligands: 78M.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.321 Water bridges: A:H.395 78M.5: 10 residues within 4Å: Chain A: F.373, V.376, A.380, A.383, I.384, A.387, E.392, M.394, W.398, L.401 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.373, A:V.376, A:A.380, A:I.384, A:W.398, A:L.401 Hydrogen bonds: A:E.392 78M.6: 14 residues within 4Å: Chain A: Q.36, E.46, I.50, S.53, F.54, I.56, G.57, F.60, R.100, F.104, L.107, L.252, C.253 Ligands: 78M.7 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.60, A:F.60, A:L.107, A:L.252 Hydrogen bonds: A:R.100 Water bridges: A:Q.36, A:Q.36 Salt bridges: A:R.100 78M.7: 7 residues within 4Å: Chain A: E.244, Q.245, G.247, L.248, V.249, L.252 Ligands: 78M.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.248, A:V.249, A:L.252 Hydrogen bonds: A:Q.245 78M.8: 6 residues within 4Å: Chain A: L.158, L.161, H.165, W.325 Ligands: 78M.11, 78M.12 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.158 Hydrogen bonds: A:H.165 78M.9: 10 residues within 4Å: Chain A: W.359, L.364, R.365, T.368, S.369, A.372, F.373, A.494, R.495 Ligands: 78M.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.359, A:R.365, A:T.368, A:A.372, A:F.373 Hydrogen bonds: A:R.495 78M.10: 13 residues within 4Å: Chain A: L.153, L.157, P.323, F.326, M.331, A.333, L.334, L.337, H.395, I.396, A.397 Ligands: 78M.4, 78M.12 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.153, A:L.157, A:P.323, A:F.326, A:F.326, A:L.337, A:I.396 78M.11: 5 residues within 4Å: Chain A: L.158, H.165, I.174 Ligands: 78M.3, 78M.8 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.158, A:L.158, A:H.165, A:I.174 Water bridges: A:H.165, A:H.165 Salt bridges: A:H.165 78M.12: 4 residues within 4Å: Chain A: L.157, W.325 Ligands: 78M.8, 78M.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.157, A:W.325 78M.13: 5 residues within 4Å: Chain A: L.337, M.340, L.341, P.344, L.348 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.337, A:M.340, A:L.341, A:P.344, A:P.344, A:L.348 78M.14: 13 residues within 4Å: Chain A: V.257, A.261, G.264, W.268, L.290, R.291, L.293, V.294, A.297, T.300, P.301, W.447, Y.493 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.257, A:A.261, A:L.293, A:V.294, A:P.301 Water bridges: A:R.291, A:Y.493 78M.15: 3 residues within 4Å: Chain A: F.477, A.481 Ligands: 78M.16 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.477, A:A.481 78M.16: 4 residues within 4Å: Chain A: A.383, V.386, F.477 Ligands: 78M.15 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.383, A:V.386, A:F.477 78M.17: 7 residues within 4Å: Chain A: F.61, L.64, S.101, F.104, V.105, G.108, F.112 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parker, J.L. et al., Proton movement and coupling in the POT family of peptide transporters. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-11-22

Peptides

Proton-dependent oligopeptide transporter family protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Proton-dependent oligopeptide transporter family protein