SMTL ID : 6ei5.1

Estimation of relative drug-target residence times by random acceleration molecular dynamics simulation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x B5Q: [2-azanyl-6-[2-(methylaminomethyl)phenyl]quinazolin-4-yl]-(1,3-dihydroisoindol-2-yl)methanone(Non-covalent)

B5Q.1: 15 residues within 4Å: Chain A: N.37, S.38, A.41, D.79, I.82, G.83, M.84, D.88, N.92, L.93, F.124, Y.125, V.136, W.148, T.170 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:A.41, A:I.82, A:D.88, A:N.92, A:L.93, A:L.93, A:V.136 Hydrogen bonds: A:S.38 Water bridges: A:N.37, A:D.79, A:G.81, A:G.83 Salt bridges: A:D.79 pi-Stacking: A:F.124, A:W.148, A:W.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kokh, D.B. et al., Estimation of Drug-Target Residence Times by tau-Random Acceleration Molecular Dynamics Simulations. J Chem Theory Comput (2018)

Release Date

2018-05-30

Peptides

Heat shock protein HSP 90-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock protein HSP 90-alpha