SMTL ID : 6ej8.1

Human Xylosyltransferase 1 in complex with peptide QEEEGSGGGQGG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.573 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: S.171, Y.174, S.175, V.177 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.174, A:V.177

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 5 residues within 4Å: Chain A: W.188, S.371, P.372, R.394, K.395 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.361 Water bridges: A:W.291 Salt bridges: A:R.394, A:K.395 PO4.4: 5 residues within 4Å: Chain A: G.132, R.133, R.159, S.160, Y.162 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.132, A:R.159, A:S.160, A:S.160 Water bridges: A:R.133, A:Y.162, A:Y.162 Salt bridges: A:R.133

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Briggs, D.C. et al., Structural Basis for the Initiation of Glycosaminoglycan Biosynthesis by Human Xylosyltransferase 1. Structure (2018)

Release Date

2018-05-02

Peptides

Xylosyltransferase 1: A
Protein AMBP: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Xylosyltransferase 1

Protein AMBP