SMTL ID : 6ejk.1 (1 other biounit)

Structure of a glycosyltransferase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

monomer

Ligands

1 x NDG- A2G- A2G: 2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-alpha-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-alpha-D-glucopyranose

NDG-A2G-A2G.1: 14 residues within 4Å: Chain A: A.10, N.13, S.14, G.15, G.16, A.17, E.18, L.95, T.98, S.119, Y.123, R.191 Ligands: UDN.2, BUE.3 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.16, A:A.17, A:E.18, A:S.119, A:S.119, A:R.191

1 x UDN: Uridine-Diphosphate-Methylene-N-acetyl-galactosamine(Non-covalent)

UDN.2: 26 residues within 4Å: Chain A: G.15, G.16, R.19, F.45, Y.46, H.118, S.119, Y.123, L.146, N.166, I.189, R.191, N.195, K.196, R.246, V.247, V.250, V.266, E.267, G.268, L.269, P.270, T.271, V.272, E.275 Ligands: NDG-A2G-A2G.1 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.123, A:I.189 Hydrogen bonds: A:G.16, A:Y.46, A:H.118, A:R.191, A:K.196, A:K.196, A:V.247, A:V.247, A:E.267, A:E.267, A:G.268, A:L.269, A:T.271, A:T.271, A:V.272, A:E.275 Salt bridges: A:K.196

1 x BUE: NerylNeryl pyrophosphate(Non-covalent)

BUE.3: 5 residues within 4Å: Chain A: H.40, R.72, K.75, T.97 Ligands: NDG-A2G-A2G.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.97 Salt bridges: A:H.40, A:H.40, A:R.72, A:K.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ramirez, A.S. et al., Structural basis of the molecular ruler mechanism of a bacterial glycosyltransferase. Nat Commun (2018)

Release Date

2018-02-07

Peptides

WlaC protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

WlaC protein

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