SMTL ID : 6ejp.1 (1 other biounit)

Yersinia YscU C-terminal fragment in complex with a synthetic compound

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.48 Å

Oligo State

hetero-1-1-mer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: K.21, E.24 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.21 PO4.4: 3 residues within 4Å: Chain B: P.1, D.26, Y.54 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:P.1, B:P.1, B:D.26

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 2 residues within 4Å: Chain A: K.50 Chain B: E.39 Ligand excluded by PLIP

1 x B8E: methyl 2-(5-methyl-2-phenyl-1,3-thiazol-4-yl)ethanoate(Non-covalent)

B8E.3: 8 residues within 4Å: Chain B: Y.10, P.16, L.17, P.18, I.68, E.69, A.72, R.76 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.10, B:L.17

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain B: K.23 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Karlberg, T. et al., Yersinia YscU C-terminal fragment in complex with a synthetic compound. To Be Published

Release Date

2018-10-10

Peptides

Yop proteins translocation protein U: A
Yop proteins translocation protein U: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Yop proteins translocation protein U

Yop proteins translocation protein U

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