SMTL ID : 6ejt.1

Nuclease NucB from Bacillus licheniformis in P21 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: R.45, T.54, D.59, R.60 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.59, A:R.60 Water bridges: A:R.45, A:R.45, A:R.86 Salt bridges: A:R.45, A:R.60 SO4.2: 2 residues within 4Å: Chain A: R.14, R.95 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.14, A:R.14, A:R.14 Salt bridges: A:R.14, A:R.95 SO4.3: 5 residues within 4Å: Chain A: A.25, A.28, H.30, S.76, R.78 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.76 Water bridges: A:S.76, A:R.78 Salt bridges: A:H.30, A:R.78 SO4.4: 5 residues within 4Å: Chain A: T.18, D.61, M.65, N.85, V.92 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.61, A:N.85 Water bridges: A:D.61, A:D.61, A:E.62 SO4.5: 4 residues within 4Å: Chain B: R.45, F.58, D.59, R.60 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.59, B:R.60 Water bridges: B:R.45, B:R.45 Salt bridges: B:R.45, B:R.60 SO4.6: 5 residues within 4Å: Chain A: P.56 Chain B: A.25, A.28, H.30, S.76 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:S.76, B:S.76 Water bridges: B:V.77 Salt bridges: B:H.30 SO4.7: 2 residues within 4Å: Chain B: R.14, R.95 4 PLIP interactions: 4 interactions with chain B Water bridges: B:R.14, B:R.95 Salt bridges: B:R.14, B:R.95 SO4.8: 2 residues within 4Å: Chain B: R.14, Y.15 2 PLIP interactions: 2 interactions with chain B Water bridges: B:Y.15 Salt bridges: B:R.14 SO4.9: 6 residues within 4Å: Chain B: T.18, I.22, D.61, M.65, N.85, V.92 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.85 Water bridges: B:E.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stransky, J. et al., Structure of novel nuclease NucB from Bacillus licheniformis. To Be Published

Release Date

2019-04-10

Peptides

Nuclease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Nuclease

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