SMTL ID : 6ekc.9 (9 other biounits)

Crystal structure of the BSD2 homolog of Arabidopsis thaliana bound to the octameric assembly of RbcL from Thermosynechococcus elongatus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

hetero-8-8-mer

Ligands

16 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain I: C.17, C.20, C.63, C.66 3 PLIP interactions: 3 interactions with chain I Metal complexes: I:C.17, I:C.20, I:C.63 ZN.2: 6 residues within 4Å: Chain I: C.28, Q.30, C.31, C.52, L.54, C.55 2 PLIP interactions: 2 interactions with chain I Metal complexes: I:C.28, I:C.52 ZN.3: 4 residues within 4Å: Chain J: C.17, C.20, C.63, C.66 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.17, J:C.20, J:C.63, J:C.66 ZN.4: 4 residues within 4Å: Chain J: C.28, C.31, C.52, C.55 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.28, J:C.31, J:C.52, J:C.55 ZN.5: 4 residues within 4Å: Chain K: C.17, C.20, C.63, C.66 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.17, K:C.20, K:C.63, K:C.66 ZN.6: 4 residues within 4Å: Chain K: C.28, C.31, C.52, C.55 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.28, K:C.31, K:C.52, K:C.55 ZN.7: 4 residues within 4Å: Chain L: C.17, C.20, C.63, C.66 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.17, L:C.20, L:C.63, L:C.66 ZN.8: 4 residues within 4Å: Chain L: C.28, C.31, C.52, C.55 3 PLIP interactions: 3 interactions with chain L Metal complexes: L:C.28, L:C.52, L:C.55 ZN.9: 4 residues within 4Å: Chain M: C.17, C.20, C.63, C.66 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.17, M:C.20, M:C.63, M:C.66 ZN.10: 4 residues within 4Å: Chain M: C.28, C.31, C.52, C.55 4 PLIP interactions: 4 interactions with chain M Metal complexes: M:C.28, M:C.31, M:C.52, M:C.55 ZN.11: 5 residues within 4Å: Chain N: C.17, C.20, C.63, D.65, C.66 4 PLIP interactions: 4 interactions with chain N Metal complexes: N:C.17, N:C.20, N:C.63, N:C.66 ZN.12: 4 residues within 4Å: Chain N: C.28, C.31, C.52, C.55 3 PLIP interactions: 3 interactions with chain N Metal complexes: N:C.28, N:C.31, N:C.55 ZN.13: 4 residues within 4Å: Chain O: C.17, C.20, C.63, C.66 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:C.17, O:C.63 ZN.14: 4 residues within 4Å: Chain O: C.28, C.31, C.52, C.55 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:C.28, O:C.55 ZN.15: 4 residues within 4Å: Chain P: C.17, C.20, C.63, C.66 2 PLIP interactions: 2 interactions with chain P Metal complexes: P:C.20, P:C.66 ZN.16: 4 residues within 4Å: Chain P: C.28, C.31, C.52, C.55 2 PLIP interactions: 2 interactions with chain P Metal complexes: P:C.31, P:C.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Aigner, H. et al., Plant RuBisCo assembly in E. coli with five chloroplast chaperones including BSD2. Science (2017)

Release Date

2017-12-06

Peptides

Ribulose bisphosphate carboxylase large chain: ABCDEFGH
DnaJ/Hsp40 cysteine-rich domain superfamily protein: IJKLMNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Q1

B
Q2

C
Q3

D
Q4

E
Q5

F
Q6

G
Q7

H
Q8

I
R1

J
R2

K
R3

L
R4

M
R5

N
R6

O
R7

P
R8

Ribulose bisphosphate carboxylase large chain

DnaJ/Hsp40 cysteine-rich domain superfamily protein

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