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SMTL ID : 6el2.1
SaFadR_lauroyl_CoA complex
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.90 Å
Oligo State
homo-dimer
Ligands
2 x
DCC
:
DODECYL-COA
(Non-covalent)
DCC.1:
26 residues within 4Å:
Chain A:
I.65
,
F.68
,
R.70
,
R.73
,
Y.74
,
L.76
,
K.77
,
T.80
,
R.86
,
V.89
,
E.90
,
G.93
,
M.94
,
F.97
,
M.101
,
Y.107
,
Y.108
,
F.111
,
H.125
,
K.128
,
L.129
,
R.132
,
Y.133
,
I.159
,
A.162
,
H.163
29
PLIP interactions
:
29 interactions with chain A
Hydrophobic interactions:
A:I.65
,
A:F.68
,
A:F.68
,
A:F.97
,
A:Y.108
,
A:Y.108
,
A:F.111
,
A:F.111
,
A:L.129
,
A:R.132
,
A:I.159
,
A:A.162
,
A:H.163
Hydrogen bonds:
A:R.70
,
A:R.73
,
A:L.76
,
A:T.80
,
A:R.86
,
A:R.86
,
A:Y.133
,
A:Y.133
Salt bridges:
A:R.70
,
A:R.73
,
A:R.73
,
A:K.77
,
A:K.77
,
A:K.128
,
A:R.132
,
A:R.132
DCC.2:
23 residues within 4Å:
Chain B:
F.68
,
R.70
,
R.73
,
Y.74
,
L.76
,
K.77
,
T.80
,
R.86
,
V.89
,
E.90
,
G.93
,
M.94
,
F.97
,
Y.107
,
F.111
,
H.125
,
K.128
,
L.129
,
R.132
,
Y.133
,
I.159
,
A.162
,
H.163
21
PLIP interactions
:
21 interactions with chain B
Hydrophobic interactions:
B:F.68
,
B:F.68
,
B:L.76
,
B:F.97
,
B:F.111
,
B:L.129
,
B:I.159
,
B:H.163
Hydrogen bonds:
B:T.80
,
B:R.86
,
B:R.86
,
B:Y.133
,
B:Y.133
Salt bridges:
B:R.73
,
B:R.73
,
B:R.73
,
B:K.77
,
B:K.77
,
B:K.128
,
B:R.132
,
B:R.132
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Wang, K. et al., A TetR-family transcription factor regulates fatty acid metabolism in the archaeal model organism Sulfolobus acidocaldarius. Nat Commun (2019)
Release Date
2018-10-10
Peptides
Transcriptional regulator TetR family:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
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Transcriptional regulator TetR family
Related Entries With Identical Sequence
6en8.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme