SMTL ID : 6el3.3 (2 other biounits)

Structure of Progesterone 5beta-Reductase from Arabidopsis thaliana in complex with NADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 29 residues within 4Å: Chain A: G.26, V.27, T.28, G.29, I.30, A.55, R.56, R.57, C.73, D.74, V.75, S.76, V.97, T.98, W.99, M.115, Q.136, T.137, G.138, K.140, Y.171, P.195, N.196, I.198, S.205, L.206, M.207, F.335 Ligands: CL.2 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:I.198, A:I.198 Hydrogen bonds: A:G.26, A:T.28, A:T.28, A:I.30, A:V.31, A:R.56, A:R.57, A:D.74, A:V.75, A:S.76, A:T.98, A:Q.136, A:Q.136, A:Y.171, A:I.198, A:S.205, A:L.206, A:M.207 Water bridges: A:R.56, A:R.56, A:S.76, A:Y.204, A:M.207, A:M.207 Salt bridges: A:R.56, A:R.57 NAP.3: 28 residues within 4Å: Chain B: G.26, V.27, T.28, G.29, I.30, A.55, R.56, R.57, C.73, D.74, V.75, S.76, V.97, T.98, W.99, M.115, Q.136, T.137, G.138, K.140, Y.171, P.195, N.196, I.198, S.205, L.206, M.207 Ligands: CL.4 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:I.198, B:I.198 Hydrogen bonds: B:G.26, B:T.28, B:I.30, B:V.31, B:R.56, B:R.57, B:D.74, B:D.74, B:V.75, B:S.76, B:T.98, B:Q.136, B:Q.136, B:I.198, B:S.205, B:L.206, B:M.207 Water bridges: B:T.28, B:T.28, B:R.56, B:R.56, B:S.76, B:Y.204, B:M.207, B:M.207 Salt bridges: B:R.56, B:R.57

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 5 residues within 4Å: Chain A: G.138, T.139, K.140, Y.171 Ligands: NAP.1 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain B: G.138, T.139, K.140, Y.171 Ligands: NAP.3 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schmidt, K. et al., PRISEs (progesterone 5 beta-reductase and/or iridoid synthase-like 1,4-enone reductases): Catalytic and substrate promiscuity allows for realization of multiple pathways in plant metabolism. Phytochemistry (2018)

Release Date

2018-09-05

Peptides

3-oxo-Delta(4,5)-steroid 5-beta-reductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-oxo-Delta(4,5)-steroid 5-beta-reductase

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