SMTL ID : 6eln.1

Estimation of relative drug-target residence times by random acceleration molecular dynamics simulation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x P4A: 4-[4-(4-methoxyphenyl)-5-methyl-1H-pyrazol-3-yl]benzene-1,3-diol(Non-covalent)

P4A.1: 16 residues within 4Å: Chain A: L.32, N.35, S.36, A.39, K.42, D.77, I.80, G.81, M.82, L.91, G.92, T.93, G.119, T.168, V.170 Ligands: SO4.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:N.35, A:A.39, A:K.42, A:I.80, A:T.93, A:T.168 Hydrogen bonds: A:L.32, A:G.81, A:G.81 Water bridges: A:N.35, A:G.79, A:T.168 pi-Cation interactions: A:K.42

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.42, G.92 Ligands: P4A.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.92 Water bridges: A:K.42, A:I.94 Salt bridges: A:K.42 SO4.3: 3 residues within 4Å: Chain A: R.30, K.193, H.194 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.30, A:R.30, A:K.193, A:H.194, A:Q.196 Salt bridges: A:R.30, A:H.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kokh, D.B. et al., Estimation of Drug-Target Residence Times by tau-Random Acceleration Molecular Dynamics Simulations. J Chem Theory Comput (2018)

Release Date

2018-05-30

Peptides

Heat shock protein HSP 90-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Heat shock protein HSP 90-alpha

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