SMTL ID : 6emu.3 (2 other biounits)

Crystal Structure of dual specific Trm10 construct from Thermococcus kodakaraensis.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x SAM: S-ADENOSYLMETHIONINE(Non-covalent)

SAM.1: 19 residues within 4Å: Chain A: L.106, D.107, P.108, W.109, I.126, G.127, I.129, D.131, K.136, K.138, T.139, T.140, R.157, K.158, I.159, V.165, V.168, D.170, I.175 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.127, A:G.127, A:K.136, A:K.136, A:K.138, A:T.139, A:T.139, A:T.140, A:T.140, A:T.140, A:I.159, A:I.159 Salt bridges: A:D.131, A:D.170

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: D.29, Y.31, W.68, P.90, T.91, S.92, E.146, L.147 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.29, A:T.91, A:S.92 Water bridges: A:S.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Singh, R.K. et al., Structural and biochemical analysis of the dual-specificity Trm10 enzyme fromThermococcus kodakaraensisprompts reconsideration of its catalytic mechanism. RNA (2018)

Release Date

2018-06-13

Peptides

tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

tRNA (guanine(9)-/adenine(9)-N1)-methyltransferase

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