SMTL ID : 6ene.1

OmpF orthologue from Enterobacter cloacae (OmpE35)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.118, V.119, S.120, R.127 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.120 Water bridges: A:R.127, A:R.127, A:R.127 Salt bridges: A:R.127 SO4.2: 3 residues within 4Å: Chain A: R.37, R.77, R.127 8 PLIP interactions: 8 interactions with chain A Water bridges: A:R.37, A:R.37, A:R.37, A:R.127, A:R.127 Salt bridges: A:R.37, A:R.77, A:R.127 SO4.9: 3 residues within 4Å: Chain B: R.37, R.77, R.127 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.127 Salt bridges: B:R.37, B:R.77 SO4.10: 4 residues within 4Å: Chain B: G.118, V.119, S.120, R.127 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.120 Water bridges: B:S.120, B:R.127, B:R.127, B:R.127 Salt bridges: B:R.127 SO4.11: 3 residues within 4Å: Chain C: R.37, R.77, R.127 3 PLIP interactions: 3 interactions with chain C Salt bridges: C:R.37, C:R.77, C:R.127 SO4.12: 4 residues within 4Å: Chain C: G.118, V.119, S.120, R.127 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.120 Water bridges: C:R.127, C:R.127 Salt bridges: C:R.127 SO4.13: 2 residues within 4Å: Chain C: Y.97, Y.101 No protein-ligand interaction detected (PLIP)

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.3: 7 residues within 4Å: Chain A: H.21, Y.22, F.23, D.30 Chain B: Y.93, Y.152, D.167 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.23, B:Y.93 Hydrogen bonds: A:D.30 Salt bridges: A:H.21

6 x C8E: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE(Non-functional Binders)

C8E.4: 4 residues within 4Å: Chain A: F.23, D.25, V.321 Ligands: C8E.5 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:V.321 C8E.5: 4 residues within 4Å: Chain A: V.300, Y.302, V.321 Ligands: C8E.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.302, A:V.321 C8E.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) C8E.7: 5 residues within 4Å: Chain A: Y.93, Y.152 Chain C: H.21, F.23, V.323 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:F.23, A:Y.93 C8E.8: 4 residues within 4Å: Chain A: E.43, Y.53, K.84, S.90 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.43, A:Y.53 C8E.14: 5 residues within 4Å: Chain B: G.19, H.21, V.323, L.325 Chain C: Y.93 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain C Hydrophobic interactions: B:H.21, B:V.323, B:L.325, C:Y.93, C:Y.93, C:Y.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Acosta-Gutierrez, S. et al., Getting Drugs into Gram-Negative Bacteria: Rational Rules for Permeation through General Porins. Acs Infect Dis. (2018)

Release Date

2018-10-31

Peptides

Outer membrane protein (Porin): ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Membrane

We predict this structure to be a membrane protein.
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Outer membrane protein (Porin)