SMTL ID : 6enk.1

The X-ray crystal structure of DesE bound to desferrioxamine B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

3 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Chain A: E.319, N.320 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.320 NA.2: 1 residues within 4Å: Chain A: D.89 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.90 NA.3: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.164

1 x BJ5: desferrioxamine B(Non-covalent)

BJ5.4: 14 residues within 4Å: Chain A: W.98, F.119, W.126, S.205, Y.212, S.214, S.219, W.246, F.247, D.266, R.268, S.270, R.296, P.298 20 PLIP interactions: 17 interactions with chain A, 3 Ligand-Ligand interactions Hydrophobic interactions: A:W.98, A:W.98, A:W.98, A:F.119, A:W.126, A:Y.212, A:Y.212, A:W.246, A:F.247, A:F.247, A:F.247, A:P.298 Hydrogen bonds: A:R.268, A:R.268, A:R.296 Water bridges: A:S.214, A:S.270 Metal complexes: BJ5.4, BJ5.4, BJ5.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ronan, J.L. et al., Desferrioxamine biosynthesis: diverse hydroxamate assembly by substrate-tolerant acyl transferase DesC. Philos. Trans. R. Soc. Lond., B, Biol. Sci. (2018)

Release Date

2018-05-02

Peptides

DesE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DesE

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