SMTL ID : 6eow.1 (1 other biounit)

Structure of Raspberry Ketone Synthase with Hydroxybenzalacetone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 25 residues within 4Å: Chain A: P.78, M.161, T.165, G.189, A.190, V.191, A.210, G.211, K.215, Y.231, N.255, V.256, C.277, G.278, M.279, I.280, S.281, Y.283, F.307, M.308, V.309, L.352, Y.353, G.355, N.357 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:T.165 Hydrogen bonds: A:A.190, A:V.191, A:G.211, A:K.215, A:Y.231, A:N.255, A:I.280, A:Y.283, A:F.307, A:V.309, A:N.357, A:N.357 Water bridges: A:D.77, A:D.77, A:Y.79, A:G.189, A:G.192, A:K.215, A:Y.231, A:K.232, A:S.354, A:G.355 Salt bridges: A:K.215 NAP.3: 27 residues within 4Å: Chain A: I.298 Chain B: P.78, M.161, T.165, G.189, A.190, V.191, A.210, G.211, K.215, Y.231, N.255, V.256, C.277, G.278, M.279, I.280, S.281, Y.283, F.307, M.308, V.309, L.352, Y.353, G.355, N.357 Ligands: BKZ.2 22 PLIP interactions: 22 interactions with chain B Hydrophobic interactions: B:T.165 Hydrogen bonds: B:A.190, B:V.191, B:G.211, B:K.215, B:Y.231, B:N.255, B:C.277, B:I.280, B:V.309, B:N.357, B:N.357, B:G.359 Water bridges: B:Y.79, B:G.189, B:G.192, B:Y.231, B:Y.231, B:K.232, B:G.355 Salt bridges: B:K.215, B:K.232

1 x BKZ: 4-(4-hydroxyphenyl)butan-2-one(Non-covalent)

BKZ.2: 8 residues within 4Å: Chain B: Y.79, Y.92, Y.105, M.161, Y.283, V.309, F.310 Ligands: NAP.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:Y.79, B:Y.79, B:Y.105, B:V.309 Hydrogen bonds: B:Y.283

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Moore, S.J. et al., A cell-free synthetic biochemistry platform for raspberry ketone production. Biorxiv (2018)

Release Date

2018-10-24

Peptides

Ketone/zingerone synthase 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ketone/zingerone synthase 1

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