SMTL ID : 6eqi.1

Structure of PINK1 bound to ubiquitin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain B: Q.1, P.28, F.29, S.30, I.113 Chain C: E.21, I.23 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain B Hydrogen bonds: C:E.21, B:F.29, B:S.30, B:S.30 GOL.2: 7 residues within 4Å: Chain C: L.66, T.73, Y.79, F.81, F.94, K.95, R.97 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:T.73, C:K.95, C:K.95, C:R.97, C:R.97 GOL.3: 7 residues within 4Å: Chain B: R.53 Chain C: K.156, K.194, S.195, D.196, E.276, Y.285 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:K.156, C:S.195, C:D.196, C:D.196, C:N.282

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schubert, A.F. et al., Structure of PINK1 in complex with its substrate ubiquitin. Nature (2017)

Release Date

2017-11-08

Peptides

Ubiquitin: A
Nb696: B
Serine/threonine-protein kinase PINK1, putative: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Ubiquitin

Nb696

Serine/threonine-protein kinase PINK1, putative

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