SMTL ID : 6eqj.1

Crystal Structure of Human Glycogenin-1 (GYG1) Tyr195pIPhe mutant, apo form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

homo-dimer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 5 residues within 4Å: Chain A: D.4, T.94, Q.95, Y.96, S.97 No protein-ligand interaction detected (PLIP) EDO.2: 5 residues within 4Å: Chain A: L.10, T.11, T.12, Y.16, V.83 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.10, A:T.12 EDO.3: 6 residues within 4Å: Chain A: E.120, L.121, F.172, S.174, W.175, K.182 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.121, A:K.182, A:K.182 EDO.4: 4 residues within 4Å: Chain A: I.60, H.89, S.92, L.93 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.92 EDO.5: 9 residues within 4Å: Chain A: F.7, S.26, L.27, H.30, T.32, V.108, N.111, I.112, D.113 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.30, A:H.30, A:I.112 EDO.6: 5 residues within 4Å: Chain B: D.4, T.94, Q.95, Y.96, S.97 No protein-ligand interaction detected (PLIP) EDO.7: 5 residues within 4Å: Chain B: L.10, T.11, T.12, Y.16, V.83 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.10, B:T.12 EDO.8: 6 residues within 4Å: Chain B: E.120, L.121, F.172, S.174, W.175, K.182 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.121, B:K.182, B:K.182 EDO.9: 4 residues within 4Å: Chain B: I.60, H.89, S.92, L.93 1 PLIP interactions: 1 interactions with chain B Water bridges: B:S.92 EDO.10: 9 residues within 4Å: Chain B: F.7, S.26, L.27, H.30, T.32, V.108, N.111, I.112, D.113 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:H.30, B:H.30, B:I.112

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bilyard, M.K. et al., Palladium-mediated enzyme activation suggests multiphase initiation of glycogenesis. Nature (2018)

Release Date

2017-12-20

Peptides

Glycogenin-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glycogenin-1

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