SMTL ID : 6erd.1 (1 other biounit)

Crystal structure of a putative acetyltransferase from Bacillus cereus species.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 5 residues within 4Å: Chain A: I.58, N.59, I.61, N.62, P.78 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.61 GOL.2: 6 residues within 4Å: Chain A: Q.69, W.70, G.72, G.163, Y.165, L.199 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.69 Water bridges: A:Q.69, A:K.126, A:G.163, A:Y.165 GOL.3: 3 residues within 4Å: Chain A: E.65, F.167, W.197 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.65 GOL.5: 8 residues within 4Å: Chain B: I.68, Q.69, W.70, G.72, G.163, Y.165, L.199 Ligands: CL.9 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:Y.165, B:Y.165 Water bridges: B:Q.69, B:Q.69, B:W.70, B:K.126, B:Y.165 GOL.6: 4 residues within 4Å: Chain B: I.88, T.93, L.94, A.95 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.88, B:A.95, B:A.95 Water bridges: B:F.49 GOL.7: 4 residues within 4Å: Chain B: N.92, Q.114, I.115, D.116 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.92, B:Q.114

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: K.55, D.80, E.81 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain B: E.47, S.48 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain B: R.123 Ligands: GOL.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leonardo Silvestre, H. et al., Functional and structural characterisation of RimL from Bacillus cereus, a new N alpha-acetyltransferase of ribosomal proteins that was wrongly assigned as an aminoglycosyltransferase. Int.J.Biol.Macromol. (2024)

Release Date

2018-09-26

Peptides

Aminoglycoside N6'-acetyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Aminoglycoside N6'-acetyltransferase

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