SMTL ID : 6ern.1

HIV Hexamer with ligand

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.36 Å

Oligo State

homo-hexamer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)

ATP.1: 12 residues within 4Å: Chain A: R.15 Chain B: R.15 Chain C: R.15 Chain D: R.15 Chain E: R.15 Chain F: R.15, N.18 Ligands: ATP.2, ATP.3, ATP.4, ATP.5, ATP.6 13 PLIP interactions: 3 interactions with chain F, 2 interactions with chain A, 2 interactions with chain D, 2 interactions with chain B, 2 interactions with chain E, 2 interactions with chain C Hydrogen bonds: F:N.18 Salt bridges: F:R.15, F:R.15, A:R.15, A:R.15, D:R.15, D:R.15, B:R.15, B:R.15, E:R.15, E:R.15, C:R.15, C:R.15 ATP.2: 12 residues within 4Å: Chain A: R.15 Chain B: R.15 Chain C: R.15 Chain D: R.15, N.18 Chain E: R.15 Chain F: R.15 Ligands: ATP.1, ATP.3, ATP.4, ATP.5, ATP.6 13 PLIP interactions: 2 interactions with chain F, 3 interactions with chain D, 2 interactions with chain A, 2 interactions with chain B, 2 interactions with chain E, 2 interactions with chain C Salt bridges: F:R.15, F:R.15, D:R.15, D:R.15, A:R.15, A:R.15, B:R.15, B:R.15, E:R.15, E:R.15, C:R.15, C:R.15 Hydrogen bonds: D:N.18 ATP.3: 12 residues within 4Å: Chain A: R.15 Chain B: R.15 Chain C: R.15 Chain D: R.15 Chain E: R.15, N.18 Chain F: R.15 Ligands: ATP.1, ATP.2, ATP.4, ATP.5, ATP.6 13 PLIP interactions: 2 interactions with chain F, 2 interactions with chain A, 2 interactions with chain D, 3 interactions with chain E, 2 interactions with chain B, 2 interactions with chain C Salt bridges: F:R.15, F:R.15, A:R.15, A:R.15, D:R.15, D:R.15, E:R.15, E:R.15, B:R.15, B:R.15, C:R.15, C:R.15 Hydrogen bonds: E:N.18 ATP.4: 12 residues within 4Å: Chain A: R.15 Chain B: R.15 Chain C: R.15, N.18 Chain D: R.15 Chain E: R.15 Chain F: R.15 Ligands: ATP.1, ATP.2, ATP.3, ATP.5, ATP.6 13 PLIP interactions: 2 interactions with chain F, 2 interactions with chain A, 2 interactions with chain D, 3 interactions with chain C, 2 interactions with chain B, 2 interactions with chain E Salt bridges: F:R.15, F:R.15, A:R.15, A:R.15, D:R.15, D:R.15, C:R.15, C:R.15, B:R.15, B:R.15, E:R.15, E:R.15 Hydrogen bonds: C:N.18 ATP.5: 12 residues within 4Å: Chain A: R.15, N.18 Chain B: R.15 Chain C: R.15 Chain D: R.15 Chain E: R.15 Chain F: R.15 Ligands: ATP.1, ATP.2, ATP.3, ATP.4, ATP.6 13 PLIP interactions: 2 interactions with chain F, 3 interactions with chain A, 2 interactions with chain D, 2 interactions with chain B, 2 interactions with chain E, 2 interactions with chain C Salt bridges: F:R.15, F:R.15, A:R.15, A:R.15, D:R.15, D:R.15, B:R.15, B:R.15, E:R.15, E:R.15, C:R.15, C:R.15 Hydrogen bonds: A:N.18 ATP.6: 12 residues within 4Å: Chain A: R.15 Chain B: R.15, N.18 Chain C: R.15 Chain D: R.15 Chain E: R.15 Chain F: R.15 Ligands: ATP.1, ATP.2, ATP.3, ATP.4, ATP.5 13 PLIP interactions: 2 interactions with chain F, 2 interactions with chain A, 2 interactions with chain D, 3 interactions with chain B, 2 interactions with chain E, 2 interactions with chain C Salt bridges: F:R.15, F:R.15, A:R.15, A:R.15, D:R.15, D:R.15, B:R.15, B:R.15, E:R.15, E:R.15, C:R.15, C:R.15 Hydrogen bonds: B:N.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

James, L.C., HIV hexamer. To Be Published

Release Date

2018-11-07

Peptides

Gag polyprotein: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

Gag polyprotein