SMTL ID : 6esc.1

Crystal structure of Pseudorabies virus glycoprotein B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-trimer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 6 residues within 4Å: Chain A: R.191, R.194, H.204, T.205, T.206, N.207 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:R.191 Hydrogen bonds: A:H.204, A:N.207 NAG.3: 6 residues within 4Å: Chain B: R.191, R.194, H.204, T.205, T.206, N.207 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:R.191 Hydrogen bonds: B:H.204, B:N.207 NAG.5: 6 residues within 4Å: Chain C: R.191, R.194, H.204, T.205, T.206, N.207 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:R.191 Hydrogen bonds: C:H.204, C:N.207

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: H.118, Y.120, D.158, Y.281, P.283, I.284 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.120, A:Y.120, A:I.284, A:I.284 Water bridges: A:H.118 GOL.4: 6 residues within 4Å: Chain B: H.118, Y.120, D.158, Y.281, P.283, I.284 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.120, B:Y.120, B:I.284, B:I.284 Water bridges: B:H.118 GOL.6: 6 residues within 4Å: Chain C: H.118, Y.120, D.158, Y.281, P.283, I.284 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:Y.120, C:Y.120, C:I.284, C:I.284 Water bridges: C:H.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vallbracht, M. et al., Structure-Function Dissection of Pseudorabies Virus Glycoprotein B Fusion Loops. J.Virol. (2018)

Release Date

2017-11-08

Peptides

Envelope glycoprotein B: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Envelope glycoprotein B