SMTL ID : 6etj.1

HUMAN PFKFB3 IN COMPLEX WITH KAN0438241

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

homo-dimer

Ligands

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.1: 1 residues within 4Å: Chain A: K.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.67 Salt bridges: A:D.109, A:E.117 DMS.5: 1 residues within 4Å: Chain B: K.67 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.67 Salt bridges: B:D.109, B:E.117

2 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.2: 13 residues within 4Å: Chain A: R.253, H.254, N.260, I.265, G.266, E.323, Y.334, R.348, K.352, Y.363, Q.389, R.393, T.441 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.260, A:G.266, A:E.323, A:Y.334, A:Q.389, A:Q.389 Water bridges: A:R.264, A:I.265, A:Y.334, A:Y.334, A:R.393, A:R.393 Salt bridges: A:R.348, A:K.352, A:R.393 F6P.6: 13 residues within 4Å: Chain B: R.253, H.254, N.260, I.265, G.266, E.323, Y.334, R.348, K.352, Y.363, Q.389, R.393, T.441 14 PLIP interactions: 14 interactions with chain B Hydrogen bonds: B:N.260, B:G.266, B:Y.334, B:Y.334, B:Y.363, B:Q.389, B:Q.389 Water bridges: B:R.264, B:I.265, B:R.393, B:R.393 Salt bridges: B:R.348, B:K.352, B:R.393

2 x BWW: 4-[[3-(5-fluoranyl-2-oxidanyl-phenyl)phenyl]sulfonylamino]-2-oxidanyl-benzoic acid(Non-covalent)

BWW.3: 16 residues within 4Å: Chain A: V.71, G.72, R.75, F.88, M.96, R.99, K.100, A.126, T.127, N.128, E.132, R.133, R.190, C.193, Y.194, S.197 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:V.71, A:F.88, A:R.99, A:T.127, A:Y.194 Hydrogen bonds: A:R.99, A:T.127, A:T.127, A:T.127, A:N.128, A:E.132 Water bridges: A:T.129, A:R.133, A:R.190, A:Y.194 Salt bridges: A:R.75, A:R.190 pi-Cation interactions: A:R.99, A:R.133 Halogen bonds: A:C.193 BWW.7: 16 residues within 4Å: Chain B: V.71, G.72, R.75, F.88, M.96, R.99, K.100, A.126, T.127, N.128, E.132, R.133, R.190, C.193, Y.194, S.197 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:V.71, B:F.88, B:R.99, B:T.127, B:Y.194 Hydrogen bonds: B:R.99, B:T.127, B:T.127, B:N.128, B:E.132 Water bridges: B:T.129, B:R.133, B:R.190, B:Y.194 Salt bridges: B:R.75, B:R.190 pi-Cation interactions: B:R.99, B:R.133 Halogen bonds: B:C.193

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.4: 17 residues within 4Å: Chain A: L.43, P.44, A.45, R.46, G.47, K.48, T.49, Y.50, S.153, N.164, E.167, V.168, K.169, V.215, V.218, V.244, Y.425 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:A.45, A:R.46, A:G.47, A:K.48, A:T.49, A:T.49, A:Y.50, A:N.164, A:E.167, A:Y.425 Water bridges: A:K.48, A:K.48, A:K.169, A:K.169 Salt bridges: A:K.48, A:K.169, A:K.169 ADP.8: 17 residues within 4Å: Chain B: L.43, P.44, A.45, R.46, G.47, K.48, T.49, Y.50, S.153, N.164, E.167, V.168, K.169, V.215, V.218, V.244, Y.425 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:A.45, B:R.46, B:G.47, B:K.48, B:T.49, B:Y.50, B:N.164, B:E.167 Water bridges: B:K.48, B:K.48, B:T.49, B:T.49 Salt bridges: B:K.48, B:K.169, B:K.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gustafsson, N.M.S. et al., Targeting PFKFB3 radiosensitizes cancer cells and suppresses homologous recombination. Nat Commun (2018)

Release Date

2018-11-07

Peptides

6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3

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